LOCUS       XM_026023905            1372 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox protein
            knotted-1-like 9 (LOC9271080), mRNA.
ACCESSION   XM_026023905
VERSION     XM_026023905.2
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089037) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_026023905.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..1372
                     /gene="LOC9271080"
                     /note="homeobox protein knotted-1-like 9; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 long SRA reads, 47 Proteins, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:9271080"
     CDS             100..1173
                     /gene="LOC9271080"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 9"
                     /protein_id="XP_025879690.1"
                     /db_xref="GeneID:9271080"
                     /translation="

MESFASLAGGGSSSTTARLPELIPPENPDRISPPPLLYQLLAGSASSARHGHGHHHGGGGGAAAAAVQGLQVSPAGAEAAMKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQQLDAADGHPRRRHEPRRDDDVPDHQLDQFMDAYCSMLTRYREELERPILEAAEFFSLIRSLLLFLTDSNCEGTGSSEEEQDTSCPEAEEIDPSDKQLKHQLLMKYGGSLGDLRQAFSKRTKKGKLPKEARLKLLHWWELHYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRHWKPTPVAGMTFPTVEAAGGGFRHSGHDGGLAAAAAAAALPLYMGSWPFVVDGMYRLGS"

     misc_feature    337..456
                     /gene="LOC9271080"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:461051"
     misc_feature    532..663
                     /gene="LOC9271080"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    754..816
                     /gene="LOC9271080"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    order(820..834,838..840,901..903,919..921,958..960,
                     964..969,976..981,985..993,997..1002)
                     /gene="LOC9271080"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(826..828,835..837,967..969,976..981,988..990)
                     /gene="LOC9271080"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    874..993
                     /gene="LOC9271080"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     polyA_site      1372
                     /gene="LOC9271080"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tctaggagatcatctcctccttttctttgctagggtttgtttgctataataactactatctatcggctcttcttcacctcatcacctgtcctatcggccatggagagcttcgccagtctcgcaggaggtggcagcagcagcaccacagctcggttgccggagctgatcccgccggagaacccggaccgcatctcgccgcccccgttgctgtaccagctgctcgccggctcggcgtcgtcggcgcggcatgggcatggacaccaccacggcggcggtggcggcgcagcagcagcagctgtgcagggactacaggtctcgccggcgggcgcggaggcggcgatgaaggccgagatcatgtcgcatccgcagtactcggctctcctcgccgcctacttaggctgcaaaaaggtcggggcgccgccggatgtactgaccaagctcacggccgtgccggcggcgcagcagcagctggacgcagccgacggccaccctcgtcgccggcacgagccacggcgtgatgacgacgtcccggatcatcagctcgatcagttcatggacgcgtactgcagcatgctgacgaggtacagggaggagctggagcggccgatcctggaagccgcggagttcttcagcttgattcgatcgctgctgctgtttttaacagacagtaattgtgaaggcacgggatcatccgaggaagagcaagacacgagctgtcctgaggctgaggagatcgaccctagtgacaagcagctgaagcaccagcttctgatgaagtacggtggctcgttgggcgatctccggcaggcgttctccaagaggaccaagaaagggaagctccccaaggaggccaggctgaagcttctgcactggtgggagctgcactacgacaaatggccctatccctccgaggtggagaagatgacgctggcgcagacgacggggctggaccagaagcagatcagcaactggttcatcaaccagaggaagcggcactggaagccgacgccggtggcaggcatgaccttcccgacagtggaagctgccggaggcggcttccgacactccggccacgacggcggccttgcggcggcggcggcggcggcggcgctgccgctgtacatgggcagctggccgttcgttgtggacggcatgtaccggctcgggtcttgaagcctctggggatcgcatgatgttcccatgatcagcctgtgggacggtgaaatggaaaaactggtgaatcttcatcacgatctttcctctcatttttttttcttttttcctttttgtgtgtgataaaagctcagatgtaccacgtactactgtctgcttcttcgcaaatggatatgtaattgaaagctttaattctaaa

//