LOCUS       XM_026022702            1303 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group protein argonaute MEL1-like
            (LOC9269807), mRNA.
ACCESSION   XM_026022702
VERSION     XM_026022702.2
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089036) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_026022702.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 3% of CDS bases
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                CP132236.1         24879110-24879139   c
            31-172              CP132236.1         24878880-24879021   c
            173-297             CP132236.1         24878681-24878805   c
            298-435             CP132236.1         24878465-24878602   c
            436-477             CP132236.1         24878218-24878259   c
            478-479             "NN"               1-2
            480-578             CP132236.1         24878119-24878217   c
            579-641             CP132236.1         24877963-24878025   c
            642-705             CP132236.1         24877823-24877886   c
            706-838             CP132236.1         24877613-24877745   c
            839-909             CP132236.1         24876971-24877041   c
            910-1004            CP132236.1         24874052-24874146   c
            1005-1036           CP132236.1         24873927-24873958   c
            1037-1303           CP132236.1         24873359-24873625   c
FEATURES             Location/Qualifiers
     source          1..1303
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
     gene            1..1303
                     /gene="LOC9269807"
                     /note="protein argonaute MEL1-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 6 long SRA reads, 3 Proteins, and 58% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:9269807"
     CDS             1..1203
                     /gene="LOC9269807"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein argonaute
                     MEL1-like"
                     /protein_id="XP_025878487.2"
                     /db_xref="GeneID:9269807"
                     /translation="

MIKTCNFLGMDFKEWPLVPLWSINDLNIAAALKSIHSTAKEQLQLLIVILPEERGNYGKIKRVCETKLGLVSQCCLPKNVKTDTNIKYLENIALKINVKVGGQNTVLQQAFVHNGIPFVSDIPTIIFGADVSHPPPGMYSSSIAGVVGSIDWPEVTTYRXLISAQLERQEIIGGLFHSTRDPKGCLKPDGMIRELMMNFYQRNRRKPERIIFYRDGISESQFSQVIIHEVDAIRKACLSLQEDYLPPITLVIVQKRHHTRIFPHTLCSNYTEQVAQIPSGTVIDQDICHPSGFDFYLCSHTSQGNSRPTHYTVIFDENHFTADGLQLLTHNLCYMYARCTRAVSIVPPLYYAHLAAARGRSYLGKFGDGSSIRNEVSSELPEFLKVPKIADRVLGVMFYC"

     misc_feature    1..1089
                     /gene="LOC9269807"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(169..171,181..183,217..228,235..237,262..264,
                     271..273,283..285,295..297)
                     /gene="LOC9269807"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(388..390,394..396,643..645,1057..1059)
                     /gene="LOC9269807"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      1303
                     /gene="LOC9269807"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atgatcaagacgtgcaacttccttggaatggatttcaaagagtggccattggtaccattatggtctattaatgatctgaacatagctgctgcattgaagtctattcacagcactgcaaaagaacaactccagctattaattgtcattcttccggaagaaagaggcaactatggaaaaattaagcgtgtatgtgagaccaagcttggactggtttctcagtgctgcttaccaaagaatgttaaaacagatacaaatataaaatacctcgagaatattgcccttaagataaatgtcaaggttggagggcagaatacagttcttcagcaagcgtttgttcataatggaataccgttcgtgtcagacataccgacaatcatttttggtgctgatgttagccatcccccaccagggatgtactcgtcatctattgcaggagtggttggatcaatcgactggccagaagtcaccacatataganngctaatctctgcccaacttgaaaggcaggagattataggaggtctatttcattctactcgagatccaaaagggtgccttaaacctgatggcatgatcagggaactgatgatgaacttctaccagaggaataggcgtaagcctgaaaggataatcttttacagagatggaataagcgaaagtcaattcagccaggttatcattcatgaagtagatgccatcaggaaggcatgcctctctctacaagaggattatctgccaccaatcacattagtgattgtccagaaaaggcatcacaccaggattttccctcacacactttgcagtaattatactgaacaagttgcacagattccctctggaactgtgattgaccaagacatatgccatccttcgggttttgatttttatttgtgtagccatacttctcagggaaacagtagacctacgcattatacagttatcttcgatgaaaatcatttcactgctgacgggcttcagttgcttacacacaacctatgttacatgtatgcacgatgcacccgtgctgtttctatagttcccccactatactatgctcatcttgctgcagcccgaggacgaagctatctcgggaagtttggcgatggatcaagcatcaggaatgaagtgtcttctgagttgcctgagtttctgaaggttccaaagattgctgatcgtgtcctaggcgtgatgttctactgttaaatgcttgtggactgtggtgacctgtctcctagggttgtactctctcctttccatactattagacgttttgacctcaacatctcttgcttagatttactaa

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