2024-09-29 10:19:05, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_026022032 651 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group auxin-binding protein 4 (LOC107277066), mRNA. ACCESSION XM_026022032 VERSION XM_026022032.1 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029267.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..651 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="12" gene 1..651 /gene="LOC107277066" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107277066" CDS 160..651 /gene="LOC107277066" /codon_start=1 /product="auxin-binding protein 4" /protein_id="XP_025877817.1" /db_xref="GeneID:107277066" /translation="
MCHQSWLERVLTVSGVCSDNSVVKDIRQMPQGTLAHGMKEVEVCLQTFGPGQRTPIHRHSCEEVFVVLKGKGTLFLGSSSMKYPGQPQEIPVFQNSTFTIPVNDPHQVWNSDEHEDLQVIVVISRPPIKVFFYDDWNMPHTAAKLQFPIFWDEECLIAPKDEL"
misc_feature 220..627 /gene="LOC107277066" /note="auxin-binding protein 1, cupin domain; Region: cupin_ABP1; cd02220" /db_xref="CDD:380349" misc_feature order(223..237,271..282,286..288,343..345,349..351, 355..357,379..381,385..387,427..429,433..438,442..456, 517..519,523..525,529..534) /gene="LOC107277066" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380349" misc_feature order(289..291,295..297,319..324,328..330,334..336, 346..348,352..354,475..477,610..612) /gene="LOC107277066" /note="active site" /db_xref="CDD:380349" ORIGIN
gaattctgatgtgaagtgaacttttcttctgaattctgatgcgaacggaggtaattctgatgtgaacggaggaaatcgcatggaccaaccatagaagcagattccagctgctcagccgcttccctcccctcctgccagcgagttccagcaagtctgcagatgtgccaccaatcttggcttgagcgagtgctaactgtatctggtgtatgttcagacaattcagtggtgaaagacattagacaaatgccccaaggcacgctagctcatggaatgaaggaggtggaagtgtgccttcagacatttggtccaggccaaaggacacccatccacaggcactcatgtgaggaagtttttgttgtgttgaaagggaaaggcacactctttctgggatcaagctcaatgaagtaccctggccagcctcaggagatccctgtctttcagaacagcacatttactatccctgtaaatgatcctcaccaggtttggaattctgatgagcatgaggatttgcaggttattgtggtcatatcgcgcccgcctatcaaagtgtttttctacgatgactggaatatgcctcacacggctgcaaaactgcagttccccatcttctgggacgaggaatgcttaattgcacctaaagatgaactctag
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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