2024-09-29 10:26:10, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_026020799 4625 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X4, mRNA. ACCESSION XM_026020799 VERSION XM_026020799.1 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029265.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4625 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="10" gene 1..4625 /gene="LOC9269715" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns" /db_xref="GeneID:9269715" CDS 120..2435 /gene="LOC9269715" /codon_start=1 /product="pentatricopeptide repeat-containing protein At1g03100, mitochondrial" /protein_id="XP_025876584.1" /db_xref="GeneID:9269715" /translation="
MLRVGRICSRSSTRAVSSFLVGPRHLIGHESPHFLGSKCCWTNRTGAIGFLNTKLNIGSYGPCLSTLTETILVQAHDPSLLALEIENAIDQQRFDDAWRAYEKHIHMDGVPRKSVLSKLITGFAETCDAHWLNQSYNVVNHAFEEKSKLLEKEPLIFLSLALARSSLPNLSINVVRKLIKMEAYPPVAAWSAIVAHMCQTATGAFLAADMVMEIGYLFQNNRVDPRKKSNRPLLLMKPNSLTFNIILTASLLFGTTKKAEQLLELMPRIGLKPDVSSLIVMARIYEQNGHRDEIQKLRRHVNEACGLSESELRQFYDCLLSCHLKFGDLDSAVDMILDMLKKGKNTKRSLEAAKAVLEAVENNKIYLPYEKTKPVNSGSSNKSVCTDSQMLNYISFFKDKSFARLELDARELLKLLSDKLQEQVGLVKSEYGILYPTETMYAKLVKAFLEANKISALASFLVKASKEDSPVSVESSFVVQVINACISLGWLEQAHDLLDEMRFSGIRVGSTIYSSLLKAYCKEGHHEDDIAALLKDAQQAGIQLDPSCYEDLIQSRAHHNNTTGALNLFKELKSLNILKAGQNEFEMLVQGCNNNGAALTTKLVEEVRSGHPVNHAIHDWNNVIHFFCKKRLMHDAHKALGKMKALGHTPNAQTFHSLVTGYAAVGGKYVEVTDLWGEMKVLATSSSMNFDQELLDSLLYCFVRGGFFLRAMEVIEMMEKGKMFIDKYKYKSLWLKYHRTLYKGKAPKVQTEAQLKRREAALHFKRWIGLT"
misc_feature 843..926 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 942..1034 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1050..1145 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1437..1520 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1560..1685 /gene="LOC9269715" /note="PPR repeat family; Region: PPR_2; pfam13041" /db_xref="CDD:463778" misc_feature 1560..1631 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature <1584..>1946 /gene="LOC9269715" /note="maturation of RBCL 1; Provisional; Region: PLN03218" /db_xref="CDD:215636" misc_feature 1647..1739 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1755..1841 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 1977..2108 /gene="LOC9269715" /note="PPR repeat family; Region: PPR_2; pfam13041" /db_xref="CDD:463778" misc_feature 1977..2057 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 2073..2177 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" misc_feature 2193..2279 /gene="LOC9269715" /note="PPR repeat [structural motif]; Region: PPR repeat" /db_xref="CDD:276811" ORIGIN
gccaccggcgcgtggcagggtgaaggctgcagcctgccggccctcgcttgcccccactgggcgccggccgagcgccaccctgcgcgggcacctagcctgtgcttgccccctactcgcaaatgcttcgtgttgggagaatttgttcaagatcttcaacccgtgctgtttcttcattcctggtgggtccaagacatttgattggtcatgaaagcccacatttcttgggctccaagtgttgttggactaaccggactggtgcaattgggttcctgaacacaaagctaaatattggtagttatggtccatgcttatcaactcttactgaaacaattctggtccaagctcatgacccatccctgctagcattggagatagagaatgcaattgatcagcagaggtttgatgatgcatggagggcttatgagaagcatattcacatggatggagtccccagaaagtctgttttgagtaagctcatcactggcttcgcagagacctgtgatgctcactggctgaaccagtcctacaatgtggttaatcatgcatttgaagagaagagcaaactgttggagaaggagccccttattttcctctctcttgcactcgcacggtcttctcttcctaatctttctataaatgttgtgaggaagttgataaagatggaagcatacccacctgttgcagcatggtcggctatcgtggcgcatatgtgccaaactgcaactggtgcatttcttgctgctgacatggtaatggagattggctaccttttccagaataatagggttgatccacggaagaagagcaaccgtccattgctattaatgaagcccaattcattgaccttcaacataattctgactgcatcccttctgtttggcactacaaaaaaggcggagcagcttcttgaattaatgcctaggatagggttgaagcctgacgtcagctcgttgattgttatggcccggatatatgaacagaatgggcacagagatgagatccagaagctgaggagacatgttaatgaggcctgtggccttagtgaatcagagctcaggcagttttatgattgcttgctctcctgccacttgaaatttggagatctggattctgcagtggatatgatattggatatgcttaaaaagggtaaaaatacgaaacgttcacttgaagcagctaaagcagttcttgaagcagttgaaaacaacaaaatttatcttccttatgagaaaaccaagcctgttaattcaggttcctcgaacaaatctgtatgtactgacagtcaaatgctaaactatatttcattcttcaaagataagagctttgcaaggcttgagttagatgcgagagaattactcaagctattatcagataagcttcaggaacaagttgggctagtaaaatctgaatatggtatcctctatccaactgaaacaatgtatgccaagcttgttaaagcttttctggaagcaaacaagatcagtgcattggcatcatttcttgtgaaagcaagcaaagaggattctcctgtctctgttgaaagctcctttgttgttcaagtgataaatgcatgtatttctcttgggtggttagagcaagcacatgaccttcttgacgagatgagattttctggaattagagttggttctaccatttattcatctctcctaaaggcatattgcaaagagggccatcatgaagatgacatagctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagtacaagtccctgtggcttaaataccacagaacattgtacaaaggtaaggctcctaaagtgcaaacagaagcacaactgaaacggagggaagcagcattgcatttcaagagatggattggattaacatgaaaactacagagcacaggtccttgaaaacactaagcctggtagatagctctgctgcttttgttcactgtatgtcataggagatgttctggtatcagcatggtttgctaccactgtatggatggacaccactgtatggaaacctctggtaataaaatcttacataacaaggattggtagtattaatagggtgcacatctttctgctctaaaattggaaggattattcaatgtcttgcaccccttaacttaactatgcagataagtctatacgtaggcatacatttatgatacattgcttcattgaaaatattgtatttcattgcacatgtctactgctatcatgtgtttgtaagaatctcttctattattagcatggggatttatcatggcttgatttgtagcataataacaggaaaagctgattcaaaacaatgtagcatgcatcacacttaattcgcaatgtcaactactaatgacagatacaacttgtcataattaagatattttgtaaattcctgctagtgaggttcataatcagaaataatatcttgattctatattgatattaggttgttctgtttgctgcaatgaacacctcagacagcaatggctacttcccatattatggtgtacctgtgtcacaaagtgacatacatgaaggcagaaggcttcttttccaaatgggcctggtgcatatgaaatatatggtttcttagccacaaacactatgagctcaattggtgaaaggggcgatttgttgataaaggaacaacagaaatgcagagtgaagtttctccatacattagactgattagagcaagtaagagggctataaaaaggctgaatgctgaggtggatgagagagcagaggagagagatgagaagcggggtgtaagtttacagtcggcttaggcgcaggagccaagaaaatctgtgatacagacaggtgggccatatatttatagtgaagagttaaccactatataagtgagttaagagatagactataaagatctatacagtaagcagctagctgtattattatccttgctcttagagaggataaaaccctacagttgcttctcccggctgcttctctctctctccaagcaaaactcccatttccaaaaaaaaaaaaaaaggtgggcttcacttcacaagttcttctccaattccgattccgaagtcctttcaacccaaaaggctgatgtgctggttgccttgtctagggtgctcctgaaatgttctttggctatgggtaccaactgaagctttgttttcgcggcgtcctcttttcatgtagttcaaattgcatttaccatttgatcaaaagcaggtgcattttgatccataattcttcatgacaaagcactacagctaagttggagaaaagaatgcagtatttgtgaagtagcagtaggccttcttgttgaggcaacagcggatatgagctatggatttatttcccttggaaggctgtaagttgaaggtgaggtgctgtcgtgctgatatcactactttccgtgcctcgagattcgtgccggatcgaataataagcactttgctcttttgttcttcatcgtgcatgcgtacttgtgagccaattgatggtgtttttgcacgtacttgtcttaaaagtaggatcacaagctaattatcttggttgcgtgacactttcactccattgccttccgatccaatatgtaagatctccttcctttattcccatgctactgatttcttcaagatataaaaaagattaatcacaaggcataaatgccatgcaatgtaattattggtagctattgcaaatcaatatatgaggctatgttgtttgtgcatggccagagaccagaatgaggggctttttgatcctgacctgagggaggtgagatcagttatcagggcagctaggacatgatgctgtgaaaagagcagcagcccccagctcatgagtcatgacagtttgtggcactccccaatcattagcagaagacataatcaattcagaactgcatgcaaaatcagggcaggttagggaatgtggatggtggatccgtggatggatagccccatcgttcttatgcttgtgcttattctcatatggcttattatcaatcaataaatgtaaaacttttatatacatgttcttagcgattcaaaaacaaatgatgtacaaataaactatgat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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