2024-09-29 10:24:54, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_026020765 3238 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase MARCH2 (LOC4324432), transcript variant X1, mRNA. ACCESSION XM_026020765 VERSION XM_026020765.1 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029256.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3238 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="1" gene 1..3238 /gene="LOC4324432" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 90 samples with support for all annotated introns" /db_xref="GeneID:4324432" CDS 289..759 /gene="LOC4324432" /codon_start=1 /product="uncharacterized protein LOC4324432 isoform X1" /protein_id="XP_025876550.1" /db_xref="GeneID:4324432" /translation="
MRRDAAAVPTAAVASPPISVEAVVIDVEGDPAVPAGAACRICHLVPEGGVGPGSEVIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTTTQRESTCWRTQPFCNFLLACLLIAFMLPWFLRVNMF"
misc_feature 397..>756 /gene="LOC4324432" /note="E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones]; Region: SSM4; COG5183" /db_xref="CDD:227510" misc_feature 403..561 /gene="LOC4324432" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(403..405,412..414,475..477,490..492,499..501, 508..510,547..549,556..558) /gene="LOC4324432" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN
aaatcacaatcacctcaccgactcaccgcgtcgtctcgtctacacaggtctcggacggctaagctaccggcccccgcccggtcgcctcccggtttggcgcttcccgcgcccgtaccccgtaggccgtagcgaggcgaagccggccagccaagccaaccccgtcccgcactcaagcacgcgcgcgccgcctcttataccgccttcccgcctcctacccagtatatccccccgtgagggcccttgatacggccgagaccgaccgggccccgatcgttcgacccggagcatatgcggcgagacgcggccgccgttccgacggcggccgtcgcctcgccgccgatctcggtggaggcggtggtcatcgacgtcgagggggatccggcggtccccgccggcgctgcgtgccggatctgccacctcgtcccggagggcggcgtcgggcccgggtcggaggtgatccggatcgggtgcggctgcaaggacgagctcggcgccgcgcaccgccactgcgccgaggcctggttcaggatcaagggcgataggcgctgtgagatttgtggttcagatgccaaaaacattattgggctggaagtgaaaaaattcatggaagaatggcatggtccaagactggcaaacacacgaactacaacgcagagggaaagtacttgttggagaacgcagcctttttgtaatttcttgctagcatgcttgctgattgcttttatgcttccctggtttctccgtgtaaatatgttctgacttttatgccattattgggtcatgtagaatttcaacttgttttcttggctaccatcaaaaggatgagttgtgtagaaatgtataggcagagtcacaacatagatccttaaacatatacttcaaatctcccttcggatctctcatgctcccctttttacttgaaatctttaatcacctttgtatagtgttgttcatttgacttatcattcttagtttgatcaggtaaccatgtaatcccctgtactcaatatggcaggactgacccttagccatttaagtgattgcagcacaaaagcaaaatattggaatttcatgtaatgttgcttcgaattgcatataggtaatttaaaaagtgggaacagcccaatagaagcaagaaattaatcaattataagttaagaccactttggctgagacaattgagagcaggaacttgcataatcaataagtgctggagtgattactggcatacatgaataattctggaaatataggactttttgaccaatttaaaagtatggaacctactaatttatttcagatcatggggctctgtttttttagattcagaaagtttcagctgggctgtttcatacttcagcttctttgtcgattaattacggttttttctttgtgcatgagcatgtaggttgcatccaaaatttcaaatagatgtatggatttggggaaatttgcaggtagcttcacaagcaatctaggcatcaggaatgacctctacttccgtaataaatcattgcaagtagtaattcaatgcttgtccaaaagaggcagctttttgttcgttgtgttgatgtcataattattaacaagatattgtcattgaagatgacatgttctggatttatgctttgctttgcttcaatggattggtttctttattctatctccattgctgacattagcaacaagattattcatgttgtgaaggtgaggcaatgttaatgttatgatccgaaccacttgccaaaaagttgggactctggtaaatattttatgaaaacaatatataacttcttttttatcttgcgtaagcttgttgactgtgtttaaccccttttctggatcaggcttttattcttatggttttagttgaactatgaaatgatatttacccggtgaactatgaaattgcaggtttccgccctgtttcttgtctctacatacaccaggtacatgcttttaccctcaataccgcctgattattcgtcttatgtcatgagttcgttacgatgttgaactagcaatttatgttaaataaagaagaaaaaaatggctaaataccaatcataattaattaggatacacaaagtattgttaaatccattcaagagaagagataaaaccttgtaaaatatgcatcgtttacatatgtaaccctatataactgatgtattttgtacgtagtgaacaatgagtagcaaagactcaaacatttacttggacagttggtgccaattgtttgtaccttgcatttgcaatctgagatatgatttcctagaattcaattgtatattgtttaacattttttaaaaaagaaatgaaactgaataagttatgcaactttttaaagtacaaacataagagattttgataacttgaaactaatgattcctctaactaagattccacaacatagaataagaaccatatactagtagggcctgcccagagaagtgccctgtgctctgacctactgaatcatgtgcctaatatatatattttttctcgatgtcccatatgatgtatgttttgcctctcctttttttttatttattttacagtttttgcagtgttgagctgagtcctggtcctaactggaattaactcaattaagcatttcatttacatcagtactactaatacagatttgctttttcaaaagaacagcgtatatctctattggttcgacttcaacggataagaatttcgttgattcgtattctgtggagatcactttaatcctggaagctcgatttccatatccaatggtggttggatggtatgagagcaatcaactaccatttgtttttgtagtacagtttcatgtcgccgtaacacctgcaatcagagaaaagcaagatagactgtacaactgatcagctactctgcctactcagctggccacaaaatgatggatgttttgcgttgctcttattgacgcgtgtagtttccgaaattttctggttagtgtagtctagctggcatgctctacctattacgccatgcttgttaattttttttttagaaaatgagataaacccagcctttgcatccaatcggcccaaacgccatgcttgttaatggtcttggaaagagtttttcgttgtgtcagtagtctgtacgaggaaatattgtaggcatctcatgttttacattctctactcgtacatcaaatgctttactacatgtcatactgattgtaatttttcatttaattgaggtcttgtgttcaactttc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]