LOCUS       XM_015785518            2322 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox protein BEL1
            homolog (LOC4339876), mRNA.
ACCESSION   XM_015785518
VERSION     XM_015785518.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089040) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015785518.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
     gene            1..2322
                     /gene="LOC4339876"
                     /note="homeobox protein BEL1 homolog; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 4 ESTs, 283 long SRA reads, 10 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 70 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4339876"
     CDS             564..2156
                     /gene="LOC4339876"
                     /codon_start=1
                     /product="homeobox protein BEL1 homolog"
                     /protein_id="XP_015641004.1"
                     /db_xref="GeneID:4339876"
                     /translation="

MMAAHHHHHEHHHLLDMSSPPNASGAIISSFDHAAGLLSLHDVAAAADHHHHHLRGGGGGLQLPSPWSQQQVSLSLYNNAAGAAGSPPSSLVAHQQLAAAQPLMFQLRGSKYLGPVKALLAEFCSLDVEAMDGAKQQRPPNPNPKIGKWDDVEGSGSWGNLSLSSMDLLDLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQVRALRNAMGESQRDAAGGVAAAAPGATKGDTPRLRVLDQCLRQQRAFQQSGAVDSFPWRPQRGLPERAVAVLRAWLFEHFLHPYPNDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEDMYKEETKPESSDGNNKLNPSAAGNKQQHRDDPKKNYTATTAEASLVQQSSYHLHLRSSGNRNSSSLMIPAAASTSIDHHHDSSHQLLGGHSYSSAAGLHHGHGGAVSLTLGLQQQQQPFAASMMHQHQQHQHQHQQQQSFMVEAAEEEEDDVLPYRNLMESQLLHDFAGAS"

     misc_feature    864..1271
                     /gene="LOC4339876"
                     /note="domain associated with HOX domains; Region: POX;
                     smart00574"
                     /db_xref="CDD:214728"
     misc_feature    order(1446..1460,1464..1466,1524..1526,1542..1544,
                     1581..1583,1587..1592,1599..1604,1608..1616,1620..1625)
                     /gene="LOC4339876"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1452..1454,1461..1463,1590..1592,1599..1604,
                     1611..1613)
                     /gene="LOC4339876"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1500..1616
                     /gene="LOC4339876"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     polyA_site      2322
                     /gene="LOC4339876"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

agcaagcagatatatatagaatcagtccaactccatggaggggcagagacaaaaaaaaagttactacaccaagaattgaattaattatgtatatatattgccaatctatatatattaattaattaattcctagccacccatgcacccaacatgtataggtatatccagtactatctagctagcttaatatttcttgttgttgcatgtgtctaactagctagctagcttgcacttgcacatgcatataattaattagttgcatgaaatcttgacatctgcaggttgtagctatatcagttagcaacaattaagcaggtgttgtagctgacttttctgagtgacaatcaaactagctagcacacatttcatcactttcacatatatactatactagactagagctatatacagtagtagtaccatggtttaattatttgtagccttatagagagagagaagagaagaagagagagagatcagtgtgaggcaccgacgaagacgaagacgaagacgacgacgacgacaagcacacaacaaatttgcacacacgcgcgcgagcatcgatgatggcggcccatcatcatcatcatgagcaccaccacctcttggacatgtcgtcgcccccaaacgccagcggcgccatcatctcctccttcgaccacgccgccggcctcctctccctccacgacgtcgccgccgccgccgaccaccaccaccaccacctacgaggaggaggagggggtttgcaattgccatcgccgtggtcgcagcagcaggtttccctctccctctacaacaacgctgccggcgcagcaggctcgccgccgtcgtcgttggttgcccatcagcagctggcggcggcgcagccattaatgttccagctgagggggtccaagtacctgggccctgtgaaggcgctgctcgccgagttctgcagcctcgacgttgaggccatggatggcgccaagcagcagagacctcccaatcccaatcccaagattggaaagtgggacgacgtggagggttcaggttcgtggggcaacctgtctctgagctccatggacctcctggatctcgagaggaggaaggccaggatcttgtccatggttgaagaggtggacagacgttaccggcgataccgtgagcagatgagggcggtggaggtgtcgttcgaggcggtggccggcggcggcgcggcgcaggtgtacacgaagctggcgatgcgagccatgtcgcggcacttccggtgcctgagggacgcgctggtggggcaggtgcgcgcgctgaggaacgccatgggggagagccagagggacgccgccggcggcgtggcggcggcggcgcccggtgccaccaagggcgacacgcctcggctgcgggtgctggaccagtgcctgaggcagcagagggcgttccagcagtccggcgccgtcgacagcttcccgtggcgcccgcagcgcggtctgccggagcgcgccgtcgccgtcctccgcgcctggctcttcgagcacttcctccacccgtatccaaatgatgtggacaagcacattttggcgcgccaaacaggcttgtcaagaagccaggtttcgaattggttcatcaatgcaagggtgaggctatggaagcctatgatagaagacatgtacaaggaagaaacgaagccggaatcatctgatggcaacaacaaattaaaccctagcgcagccggcaacaaacagcagcatcgagatgatcccaagaagaattacacggcaacgacagcagaagccagcttagtacaacaaagcagctaccatctccaccttcgcagcagcggaaaccgtaactcctcctcgttgatgatccctgcagcagcatcaacatccatcgatcatcaccatgacagcagccaccagctgttgggcggccatagctattcttcagcagcaggattgcatcatggtcatggcggcgccgtgtcgcttactctagggctccagcagcagcagcagccatttgcggcgtcgatgatgcatcagcatcagcagcaccagcaccagcaccagcagcagcagtcattcatggtggaggcggcggaggaagaagaagatgacgtgctcccttacaggaacctcatggagtctcagttgctgcatgattttgcaggagctagctaaggcaggctccagcttagcatgcagctaatttatttgattgttaaaggagattattgcgctcaaaagtttaatttaattaaggagatgtaggtaattaaatattacattattgttcttttatgaccaaacatttcgttacattatttggggatttcttttgtaaaaa

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