LOCUS       XM_015783212             693 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper
            protein HOX3 (LOC107275455), mRNA.
ACCESSION   XM_015783212
VERSION     XM_015783212.1
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089039) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="5"
     gene            1..693
                     /gene="LOC107275455"
                     /note="homeobox-leucine zipper protein HOX3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 Proteins"
                     /db_xref="GeneID:107275455"
     CDS             1..693
                     /gene="LOC107275455"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX3"
                     /protein_id="XP_015638698.1"
                     /db_xref="GeneID:107275455"
                     /translation="

MEPMGILKCPSSLKLSVAVPGHALNPFSDGGSGSGSGSGSGCNNNNTRELGIHLDLDRPYAREELPQQGGSMEVQKGEERGGVRHNSSNHRRLSRVQSKQLDEFYRVNHTVDSKQKKELADRLNLRISQVDAWFRNRRLRSKQKSTEMECAYLKECFNKLKEENHRLQLQVEQLRSTSLQLQLQLQLHSERVATAPTGQQAGTSAAARIFTLPLSGYNPSRGTWFSPNAH"

     misc_feature    274..426
                     /gene="LOC107275455"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(274..276,394..396,403..408,415..417)
                     /gene="LOC107275455"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    430..>528
                     /gene="LOC107275455"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
ORIGIN      

atggagcctatgggaatcctgaagtgcccttccagcttgaagctctccgttgctgttcctggtcatgccctcaaccccttctctgatggcggtagtggtagtggtagtggtagtggtagtgggtgcaacaacaataacacaagagaactgggtatccacttggacttggaccgcccgtatgcaagagaagagctaccgcagcaaggtggcagcatggaggtgcagaaaggggaggagagaggcggtgttaggcacaatagctccaaccataggcggctttctagggtgcaatccaagcaacttgatgaattttatcgtgtaaatcacacagttgattccaaacaaaagaaggagttggcagatcgactgaatcttcggataagtcaggtggatgcttggttccgcaaccgcaggttaaggtcgaagcagaaatccacggagatggagtgcgcctatctgaaggaatgcttcaacaaactgaaagaggagaaccaccgcctccagctccaggttgagcagctcaggtcaacgagcttgcagctgcagctgcagctgcaactccacagcgagcgagtcgccacagctcccactggacagcaagccggcacttctgcggctgctcgcatcttcactttgcctttgtccggatacaacccttccagggggacttggttctcgccaaatgcacactga

//