LOCUS       XM_015778094             872 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group sm-like protein LSM1B
            (LOC4335963), mRNA.
ACCESSION   XM_015778094
VERSION     XM_015778094.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089038) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015778094.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
     gene            1..872
                     /gene="LOC4335963"
                     /note="sm-like protein LSM1B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 21 ESTs, 1199 long SRA reads, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 167 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4335963"
     misc_feature    1
                     /gene="LOC4335963"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             225..614
                     /gene="LOC4335963"
                     /codon_start=1
                     /product="sm-like protein LSM1B"
                     /protein_id="XP_015633580.1"
                     /db_xref="GeneID:4335963"
                     /translation="

MSSWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGSMRKRMEFLDFD"

     misc_feature    261..473
                     /gene="LOC4335963"
                     /note="Like-Sm protein 1; Region: LSm1; cd01728"
                     /db_xref="CDD:212475"
     misc_feature    order(270..272,279..284,297..299,303..311,318..320,
                     324..326,339..350,357..362,366..368,429..467)
                     /gene="LOC4335963"
                     /note="putative oligomer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:212475"
     misc_feature    order(294..314,318..356,360..374)
                     /gene="LOC4335963"
                     /note="Sm1 motif; other site"
                     /db_xref="CDD:212475"
     misc_feature    order(348..350,354..356,441..443)
                     /gene="LOC4335963"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:212475"
     misc_feature    429..464
                     /gene="LOC4335963"
                     /note="Sm2 motif; other site"
                     /db_xref="CDD:212475"
     polyA_site      872
                     /gene="LOC4335963"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

aacctcacacttgacgatagttcctttcatcaatcacccagctttactcctcttctccccccgccccgcttcaccaatcaatccaaaccctagagcaaatcccctccctcccttgccggaatcgctcgcaagctccaggcagcccccacaccagtccgcggcggatcagggggcggggcgatctctagcgccctccgggatttgaagggttccgagcgtcggcgatgtcgtcgtgggccgggcccgacgagatcttcctctccacgtccctggccggcttcttggacaagaaacttattgtcctactacgagatggacggaagctgcttggcacactctgctcatttgatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgtaggtgaactatattgtgatgttcctcttggtctatatgtgatccggggagagaatgtcgtattaatcggagaattggatcgtgagaaggatgaactccctgctcacatgacttgtgtttcagaggctgaaataagaaaggccgagaaagcagaaagggaagcgagagatctgaaaggttcaatgaggaagaggatggagttcttagactttgattagaatggatttgaccatcttgatagttgctgctcccactatggccgcgagtttttaatggcagcctctgctacatatgtgggctaatgaaagccagatttcgttgtatctcatgctgcttgttcagccagaattcttcaggttggagatttcagtaaacatactcttttacagcggtaatgtacctgtgttcttaaaatttcttcagatatcttcctgtcctcttgttgcatggaatttgtgaaatttccttcgccacca

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