LOCUS       XM_015772706            2844 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox protein BEL1
            homolog (LOC4331452), transcript variant X1, mRNA.
ACCESSION   XM_015772706
VERSION     XM_015772706.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089037) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015772706.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2844
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..2844
                     /gene="LOC4331452"
                     /note="homeobox protein BEL1 homolog; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 163
                     long SRA reads, 12 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     52 samples with support for all annotated introns"
                     /db_xref="GeneID:4331452"
     CDS             633..2408
                     /gene="LOC4331452"
                     /codon_start=1
                     /product="homeobox protein BEL1 homolog"
                     /protein_id="XP_015628192.1"
                     /db_xref="GeneID:4331452"
                     /translation="

MAHDPNLGFADYFSAADASASSVTTLMPAMDEAAPELFGLQAGMELLGVRGLGMSMMPGAAGKVAALVADAGDDGGGGSTMRFLSEQHQQPSQAPLSLSLCRPDGVLHLGGAARPQHQLAPAAPWMTHHDASSSAPQVHGAWHLRSSRFLLPTQQLLQEFCSLPVDSTKRGNGAKAATQQEDGRGDGSSSSSASWTPSPQIQAMEALELQRLKDKLYIMLEEVDRRYRRYCEQMRAVAGGFEAVAGERAAGAYTAVAARTISRHFRSLRDGIVAQLQAARKALGEKDVSAAGTTRGQTPRLRVIDQCIRHHKSLQGVAAMDSHPWRPQRGLPDRAVTILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYVEEMKGQDGGDGSGGQGSLNPKPTCSHASEARGGQQLVVGDGDGGEQKPTRAQLRHDAGSLASVVNVDVAAGAGGVARLHQAENFGIMDHLDFDAYDDSHHQQQHGGFGGVSLTLGLQQHGSHGGGGVNIAFGAPGSAHGGAGFLYPGEQMAPDAMHPGHGHHVVGGQFGVAMDGDAASHAQERYRSLSAGFHLLRDLAG"

     misc_feature    1059..1451
                     /gene="LOC4331452"
                     /note="Associated with HOX; Region: POX; pfam07526"
                     /db_xref="CDD:429514"
     misc_feature    order(1605..1619,1623..1625,1683..1685,1701..1703,
                     1740..1742,1746..1751,1758..1763,1767..1775,1779..1784)
                     /gene="LOC4331452"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1611..1613,1620..1622,1749..1751,1758..1763,
                     1770..1772)
                     /gene="LOC4331452"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1659..1775
                     /gene="LOC4331452"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     polyA_site      2844
                     /gene="LOC4331452"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tgagtagacgcaataagccctgcagacgccgcatgtacagactacagctcgagaagacgcactggaactagtctcctgcagatatttggatgggatgtagcagttgcagcggcagcggcagaaggagaagttgctggtaagaagtagcgcgcagctgctcctgcgcgcgcatgtacagggcgcgaggcgaaagcttgacgcggcaaccaccacccaccccccaccccgcccggctcagacctcgccatcgatcgacctgctcgcgctctctccctccctccctccccattgatcccatgacaaagcaagattcctgtgtttctgaggcttagctgaggaaggattcggcctacctgctctcttctcctgcccggccgattgctacgacttgcaacacgcatcaccatagtaatagtatcgtcgtgttcactctccgacgacttaattgtgtgcgtgttgtatttcccaccgtcttgtcacttcatcacacatctggctacatcgatggatcactggtgctactagctagctagctcgctagttactcgattactggctgaattttcgcttctgtctccatctattttacacaaattaaagcttttggcgatcggaggaattgaaacaccgatatggcgcatgatccgaacctggggttcgcggattacttctcggcggcagatgcatcggcgtcgtcggtcacgacgctgatgccggcgatggacgaagcggcgccggagctgttcgggttgcaggccgggatggagcttctcggcgtgcgcggtctgggtatgagtatgatgcccggcgcggcaggcaaggtcgccgcgctggtggccgacgctggggacgacggcggcggcggctccaccatgcgcttcctcagcgagcagcaccaacagccgagccaggcgccgctgtcgctgtcgctgtgccgcccggacggcgtgctgcacctcggcggcgcggcgcggccgcagcaccaactggcgcccgcggcgccatggatgacgcaccacgacgcgtcgtcgtcggcgccgcaagtgcacggcgcgtggcacctgcgcagctcgaggttcctcctcccgacgcagcagctcctccaagaattctgcagcctccccgtggacagcaccaagcgcggcaacggcgccaaggcagcgacgcagcaagaagacggccgcggcgacgggtcgtcgtcgtcgtcggcctcgtggaccccgtcgccgcagatccaggccatggaagccctggagctgcagaggctcaaggacaagctctacatcatgctcgaagaggtggacaggaggtacaggaggtactgcgagcagatgagggcggtggccggggggttcgaggcggtggccggggagagggcggcgggggcgtacacggcggtggcggcgaggacgatatcgaggcacttccggagcctgagggatgggatcgtggcgcagctgcaggcggcgaggaaggcgctcggggagaaggacgtgagcgcggccgggacgacgcgggggcagacgccgcggctcagggtgatcgaccagtgcatcaggcaccacaagtcgctgcagggcgtcgccgccatggacagccacccgtggcgcccccagcgcggccttcccgaccgcgccgtcaccatcctccgtgcctggctcttcgagcacttcctgcacccgtatccaagcgacgtggataagcacatcctggctcgacagacgggcctctcacgtagccaggtgtccaactggttcatcaatgcgagggttcggctgtggaagccaatggtggaggagatgtacgtcgaggagatgaagggccaggacggcggcgacggcagcggtggacaggggagcctaaaccctaagcctacctgcagccacgcctccgaggcgcgcggcggccagcagctggtcgtcggcgatggcgacggcggcgaacagaagccgacgagggcgcagcttcgccacgacgccgggtcgctggcctccgtcgtcaacgtcgacgtcgcggccggcgcgggcggcgtggcccggctgcaccaggcggagaacttcggcatcatggaccacctcgacttcgacgcgtacgacgacagccaccaccagcagcagcacggcgggttcggcggcgtgtcgctgacgctcgggctgcagcagcacggctcccacggcggtggcggcgtgaacatcgcgttcggggcgccggggtccgcgcacggcggcgccgggttcttgtacccgggcgagcagatggcgcctgacgccatgcatccggggcacggccaccacgtcgtcggcggacagttcggcgtggccatggacggcgacgccgcctcgcacgcgcaagagcggtaccggagcctaagcgccggcttccacctgctccgcgacttggccggatgatccatgcggcgaactactcagttcatcgcacgtacgcatatatatgcattccgtgtactgtactagcagacgatttggatgtcgcagcggcagcggccgcggcggtggcgactaggtagggatcctcgcgcgcggccggcgctgcggcgtgcattggttgggcaaccgaattaagcgtttttgttggtggtggtccttgattttaccgacctataggtacagttcgtatatatctctcgcgatcgatcgtacaccagcaggggagtagcccagtagatcgtcgtcgatggcgctttcgtgtggttcggaagcgggcagtttattttagcctaccggcccggcatcggttgccgggggttgtgtggtcgtgtgttgtgtagtggagacagcttttatttgtactggaaatctggaatttgattgatggttcaactta

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