2024-09-29 10:33:09, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_015772177 1271 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase MARCH2 (LOC4324432), transcript variant X3, mRNA. ACCESSION XM_015772177 VERSION XM_015772177.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029256.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015772177.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1271 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="1" gene 1..1271 /gene="LOC4324432" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:4324432" CDS 297..734 /gene="LOC4324432" /codon_start=1 /product="E3 ubiquitin-protein ligase MARCH2 isoform X3" /protein_id="XP_015627663.1" /db_xref="GeneID:4324432" /translation="
MRRDAAAVPTAAVASPPISVEAVVIDVEGDPAVPAGAACRICHLVPEGGVGPGSEVIRIGCGCKDELGAAHRHCAEAWFRIKGDRRCEICGSDAKNIIGLEVKKFMEEWHGPRLANTRTTTQRVSALFLVSTYTSVYLYWFDFNG"
misc_feature 411..569 /gene="LOC4324432" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(411..413,420..422,483..485,498..500,507..509, 516..518,555..557,564..566) /gene="LOC4324432" /note="cross-brace motif; other site" /db_xref="CDD:438158" ORIGIN
tacgcaccaaatcacaatcacctcaccgactcaccgcgtcgtctcgtctacacaggtctcggacggctaagctaccggcccccgcccggtcgcctcccggtttggcgcttcccgcgcccgtaccccgtaggccgtagcgaggcgaagccggccagccaagccaaccccgtcccgcactcaagcacgcgcgcgccgcctcttataccgccttcccgcctcctacccagtatatccccccgtgagggcccttgatacggccgagaccgaccgggccccgatcgttcgacccggagcatatgcggcgagacgcggccgccgttccgacggcggccgtcgcctcgccgccgatctcggtggaggcggtggtcatcgacgtcgagggggatccggcggtccccgccggcgctgcgtgccggatctgccacctcgtcccggagggcggcgtcgggcccgggtcggaggtgatccggatcgggtgcggctgcaaggacgagctcggcgccgcgcaccgccactgcgccgaggcctggttcaggatcaagggcgataggcgctgtgagatttgtggttcagatgccaaaaacattattgggctggaagtgaaaaaattcatggaagaatggcatggtccaagactggcaaacacacgaactacaacgcagagggtttccgccctgtttcttgtctctacatacaccagcgtatatctctattggttcgacttcaacggataagaatttcgttgattcgtattctgtggagatcactttaatcctggaagctcgatttccatatccaatggtggttggatggtatgagagcaatcaactaccatttgtttttgtagtacagtttcatgtcgccgtaacacctgcaatcagagaaaagcaagatagactgtacaactgatcagctactctgcctactcagctggccacaaaatgatggatgttttgcgttgctcttattgacgcgtgtagtttccgaaattttctggttagtgtagtctagctggcatgctctacctattacgccatgcttgttaattttttttttagaaaatgagataaacccagcctttgcatccaatcggcccaaacgccatgcttgttaatggtcttggaaagagtttttcgttgtgtcagtagtctgtacgaggaaatattgtaggcatctcatgttttacattctctactcgtacatcaaatgctttactacatgtcatactgattgtaatttttcatttaattgaggtcttgtgttcaactttc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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