LOCUS       XM_015771633            4472 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group uncharacterized protein
            (LOC4330879), mRNA.
ACCESSION   XM_015771633
VERSION     XM_015771633.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089036) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015771633.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4472
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
     gene            1..4472
                     /gene="LOC4330879"
                     /note="uncharacterized LOC4330879; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 11 ESTs, 103 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 70 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4330879"
     misc_feature    1
                     /gene="LOC4330879"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             35..3529
                     /gene="LOC4330879"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="XP_015627119.1"
                     /db_xref="GeneID:4330879"
                     /translation="

MEPSPEIPPPPPAFAAGGEGDPHAPTTAAARSSSSSSLFPLFPLSAPEESSAPAAGSQWLSNPSFSFDASSLNIPATASSSVPPPLSASSDEEEAPRPAPAKYDLLPYSPSPPASDEERRDRRKDRKRRKRRREKERYNSAEASRKPGVRAWAGSETKLAKDYYFDAKGDQDNLAFGSIYRMDIARYKSQNMPEARGLKRLLFHNLGVSVHMGHESDLDGLNSKARAGGRYYSAKYAVVERNKGFKHLKVLKKDNSAILPEDFIPLGIPSLPENNTTGEQELEESWEDEILRRTREFNKMSREFPHNEKIWLDFARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKAYGERDSTQNLLDKWEQILMKHPDSCKLWKQYLLLCQGEFSRFKVSDLRKSYAYAVQALSAACTKLCRQDTQYDRLEPKYSSLIHLELGLVDIFVNLCRFEWHTGHRELATALFQAQIEFSLFSPPLHLTTSSKQRLFEHFWNNGGARIGEDGALGWSRWLAKDEESRQNIDIQENTQETERGGWSGWFDPSLRTNSETSKVEPSTSDGNDAENPDDEDPSAQEDVESLLKKLGIDGDADYNSEVKDPKTWNRWSFMELSRDNEQWMPLHEKLGSLYSDDAPTGEDNDQLSRVILFEDITEFLFSLSSEEARFSLICQFIDFYGGKISRWTSTNSSSWIDRNLSLEMITDDIQEDLSTVSNLIDKNQTSVHNKMVSLLGTMHEFSQRPGTAKFLKNAILLFLDVFPRNHILEEAVLVTPQIHTAQEKYLATPATASRALAKNLLKKDRQDLLLCGIYGRIEAMNGDFVKARHIFDLALSTSQGASEDLRKKVPILYFWYAEMELAIYASRNNSDSVDRAIHVLSCLGDKAKYASFDGSISRPQVLKARQGFKEQIRSLRSSFASDGMKEESVALICSASLFESMTSGFASGLEVIEETFYMTPSENNHSLEFEELWMHYIKQLQKNLNQLSLSRVWPKISQGIQTYPYNPKSYAAMLTLGCLYSVSNNLRLTLDKFNQRDPSIIGLLFALSFELCKAGSDNRIHNLFERALTDDKLQKSVLLWRCYLAYEAEIACNASAARRVFFRAIHACPWSKRLWLDGFEKLSSILTLKELSDLQEVMRDKELHIRTDIYEILLQDETDT"

     misc_feature    <173..>373
                     /gene="LOC4330879"
                     /note="Atrophin-1 family; Region: Atrophin-1; pfam03154"
                     /db_xref="CDD:460830"
     misc_feature    521..835
                     /gene="LOC4330879"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    order(521..544,551..556,566..571,575..577,581..610,
                     614..628,644..652,656..664,698..706,716..721,725..730,
                     737..757,779..790,809..835)
                     /gene="LOC4330879"
                     /note="MTR4 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:412048"
     misc_feature    920..2089
                     /gene="LOC4330879"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
     misc_feature    2963..>3403
                     /gene="LOC4330879"
                     /note="Uncharacterized conserved protein, contains HAT
                     (Half-A-TPR) repeat [General function prediction only];
                     Region: COG5191"
                     /db_xref="CDD:227518"
     polyA_site      4472
                     /gene="LOC4330879"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggctctctctcctccccctcggctcgcaaccgccatggagccatcgccggagattccgccgccgccacccgccttcgccgccggcggagaaggcgatccgcatgctcccaccacagccgccgcccgctcctcctcctcctcctctctatttcctctcttccccctctcggcgcccgaggaatcctccgcccccgcggcggggtcccagtggctctcaaaccctagcttctccttcgacgcctcctccctcaacatccccgccactgcctcctcatccgtaccgccgccgctaagcgcctcgtcggacgaagaggaggcgccacggcccgcacctgctaagtatgacctgctgccctactcaccgtcgcctccggcctccgacgaggagaggagggacagacggaaggataggaagaggaggaagcggaggcgggagaaggagcggtacaatagcgcggaagcctcgcgaaagccgggggttcgcgcttgggctgggtcggagacgaagttggctaaggattactacttcgacgccaagggcgaccaggataacttggcgtttggatcgatatacagaatggatattgcacgctacaagtctcaaaacatgccagaggcacgtggtctaaaacggcttttgtttcataacttgggtgtctcggtacatatgggtcatgagtcagatttagatggactgaatagcaaagcaagagctggaggtcgctactactcggcgaaatatgcagttgtagaaagaaataagggtttcaaacacctaaaagtattgaaaaaggataactctgcaattctcccagaagattttatccccctagggataccatctcttcctgaaaataacactactggggaacaggaacttgaagaatcttgggaagatgaaatacttcggaggacacgagaattcaacaagatgtctcgggagttccctcacaatgagaaaatttggttggactttgcccgattccaggataaagttgccagtactcaacctcagaaagcagcccgtttgcaaacaactgaaagaaaaattagtatattggaaaaagctgtagagcttaatccagataatgaagaattattgctttatcttctgaaggcatatggtgagagggatagcacccagaatctcctggataaatgggagcagatactcatgaaacacccggatagttgtaagttgtggaaacagtatctacttctgtgtcaaggggaattctccagattcaaagtatctgacctacggaagtcttacgcttatgcagtacaggctttatctgcagcttgtactaagctatgtaggcaggatacacaatatgatcgtctcgaacctaagtattcttccttaattcatcttgaactcggtctagtggatatatttgtgaatttgtgtcggttcgaatggcatactggacatcgggaattagcaactgcactatttcaggctcaaatagaatttagtttattctcccctccccttcatctgaccacaagcagtaagcaaagactctttgagcacttctggaacaatggtggtgctagaatcggagaagatggggctcttggatggtccagatggttggcaaaagatgaggagagtagacaaaatatagatatacaagaaaatacccaagaaactgaaaggggtggttggagtggttggtttgatccttctctaaggactaatagtgaaacaagcaaagtggaaccatcgacatctgatggaaatgatgcagaaaatccagatgatgaggacccatctgcacaagaagatgttgaatctttgctgaaaaagcttgggattgatggagatgctgattacaatagtgaagttaaagatccaaaaacgtggaatagatggtcatttatggagttatcaagggataatgaacaatggatgcctcttcatgaaaaacttggatcactttattctgatgatgctccaactggagaagacaatgatcagctttccagagtaattttgtttgaggatataactgagttcctgttctctctatcttctgaagaggctcgcttttctttgatatgccaattcattgatttctatggtggaaaaatttctagatggacatccaccaacagttcaagttggattgataggaatttgagcctagagatgattacagatgacattcaggaagatcttagtacggtgtctaaccttatagacaagaaccaaacttcagttcataataaaatggtgtcattgttaggaactatgcatgaattttctcaaaggcctggcactgcgaaatttctgaaaaatgcaatattgcttttccttgatgtattccctcgtaatcatatcctggaggaagctgttcttgttaccccccaaattcatacagctcaagaaaaatatctggctactccagccaccgcatcccgggctttggccaaaaatctattgaagaaagacagacaggatcttttgctttgtggaatatatggacgaattgaggctatgaatggggactttgtcaaagcaaggcatatattcgacttggcactatcaacttctcaaggagcttcagaggatctcaggaagaaggttcctattctttatttttggtatgctgagatggagctagcaatatatgcttcaagaaacaattctgactctgtggatcgtgcaatccacgttctgtcctgcttaggggacaaggcgaagtatgcttcttttgatgggtctatatcacgacctcaggtgttaaaggctcgtcaaggatttaaagagcagattagaagcttgcgatcttcatttgcaagtgatggtatgaaagaagagtctgttgctctaatctgctcagcatctttgtttgagagtatgacatctggttttgcttctggtcttgaagttatagaagagaccttttatatgacaccttcagagaacaaccatagcttagaattcgaagaattgtggatgcactacatcaagcagcttcagaaaaatcttaatcagttgagtctctcaagggtttggccaaaaatatcgcaaggaatacaaacatatccgtacaacccaaaatcatatgcagccatgttaactctaggttgcctttacagtgtttccaataatctacgtctcacactcgacaaatttaatcaaagggatccttccataattggcttgctctttgctttgtcctttgaattgtgcaaagctggatcagacaatagaatacacaatctgtttgagagagctctgactgatgataagttacagaaatccgttctgttgtggcgctgttatctagcttatgaggcagagatagcttgcaatgcttctgcagctcggcgtgtgttcttcagagctatacatgcctgtccatggtctaaacgattatggcttgatggatttgaaaaactgagttcaattttgacactgaaagagttgtcagatctccaagaagtaatgcgtgacaaggaattgcacattcgaactgacatttatgagatactcctgcaagatgaaacagatacgtgatgcagctatccctgtttttgtccataattcgagatctccatattatctcaaggttccatcttgcaactgaagatcggttgcatgtgatcttttaactcataattgttggactctcaagatcggttgctcaggaacctttatgtcgcatggaatgtgatctggacacgatgtacatccaaagcatctttagattggcaatctcgtgacatattaatgtgatttattttctgttcctggagacatatgttcggcttgtgtctggtcactccaatccttgtatttggttggctcatgcttcttggaagggcacaactgcaggaagaggtcaatatgaagtaatgatggaggaaagcatagagcggcagcataaagttgaaattgtcttgccaaaatggaacatcaaaagctggcagagaatcgagttgataaataaaaaattactgcgtcttcaggttgggggtatttatgcagtaccctagcgtcaatcaaaagcctggagtatgtcttcatttatcatctttctgcgattaaacgatgcttgtcctttttaaaacggaaagaaggaaagcttagttctgaacataatatactaatattgtggtatatatgtgtacaatgcttgaagtgacacatttttttttgaaaaaaaaaagaaactaccgtaaaaatatgactcggtaattacaaaagagggttgctagatgaggggtgcatactacctcttgttagctgagtctgctgcagcaaatgatgttagtaggtatagttgtataccatgttctcgtaggatactgtttactctttatttgttatgctccgctgctgtgatgcctgcgtcctatactcctagccaaacgcccacgcgatacggcgatggtggagagaggccgataggctatagcgctttcgagtattcttgtattcgacggtccatttgcagtta

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