2024-09-29 10:32:48, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_015768253 3146 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X1, mRNA. ACCESSION XM_015768253 VERSION XM_015768253.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029256.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015768253.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3146 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="1" gene 1..3146 /gene="LOC4327456" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns" /db_xref="GeneID:4327456" CDS 336..2858 /gene="LOC4327456" /codon_start=1 /product="protein NETWORKED 2A isoform X1" /protein_id="XP_015623739.1" /db_xref="GeneID:4327456" /translation="
MLRRAASNAYSWWWASHIRTTQSKWLDNNVQEMEIRVKAMIKLIDIEADTFARKADLYFKSRPDLINHVEETYRSYQALADRYDRVSGELHKSNHTIATAFPEQVQLSLQDDNGDGFPKGITGININRGTSAAPKRTQTHKKISSKMSKDKAQEEIERLQKKILVLQTEKEFFKSSYESSLNKYLSIERQAAEMQEEVWSLQETFSTSAVIEDNEARALMAAQALISCEDKLASLHCEQKRSYEETTMEIQRVIDAKKKITIFKSECGYPDDQKDLPNHQDIEFSSIPSSIEDSDLIMKDCKLELQELSQKVKQKFESSSEASAVHLAGQVDEIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLEDEKAALIEDSSKLSERLKQVEEVLQTIQRIGKSVHSENGNIHQQLTEVDDSLNDFVKKLDAHSTDEIVNSSQDDSGIACKSKDEGLLDALDDSSKAHKEEPDETLGWQQLDLNGLEDKDKILLKDYASILRNYKDTQKQLLEIEKRNREYHLEAMSEMNELKSSSATKDDEIRSLRRMLSSLQTKLNNSLPQRFVESEESSEANASPSLENKNIAETEEYMKIREHEEPHDPSLEDKFRAEISRILEENLDFWLRFSTSYHYMQKFQKSFDKAKAEMDKLTDAKAQEGSDAVPSCQSARKQESAVLEKKLRGLSTDLQVWLEKNVLLQGELESRFSLLCSIEEEISKITALGQTDEAHFTPFQAAKFQGEVSSMKQENSKVTKELQTGMDHVRSLQVEVGRALLKLRENIELSIGRRNRTQHSFRSLSMKAGVPLRTFLFGSKPKKASLFSCMGPVMPKPVADMRAGPFG"
misc_feature 366..587 /gene="LOC4327456" /note="KIP1-like protein; Region: KIP1; pfam07765" /db_xref="CDD:429647" misc_feature 753..>1610 /gene="LOC4327456" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" misc_feature 1248..>2669 /gene="LOC4327456" /note="Coiled-coil domain-containing protein 158; Region: CCDC158; pfam15921" /db_xref="CDD:464943" ORIGIN
tgcagtccaccggcgtccccgcgcctcgcgggcggccggccgcagcgcagggcggttcggccgcgcgccgcgggcagccacccgccgcagcgcgaccgctcgcggacggatcccctcccctcccctaatctcgccatgcctttccccaccaccaccgcccccccggggccttcccggccccgccctcaccctagccagcgccacgccgccagtagcggtagcattagccgtagaggaaggctaggacgcataggaagaacaggaggaggaggaggaggaggaggaggagaggtggggggtaggaggacggaggaggaggaggcaggctgcccgcgatgctgcggcgcgcggcgagcaacgcctactcgtggtggtgggcgagccacatccgcaccacccagtccaaatggctcgacaacaacgtccaagagatggagataagggtgaaggccatgatcaaactcatagatatagaggctgatacatttgcaaggaaggcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcatagatgcaaagaagaagataacgattttcaagagcgagtgtgggtatcctgatgatcagaaggacctacctaatcaccaagacatagagttcagctctataccttcatctatagaggatagtgatctaattatgaaagactgcaagctcgagctgcaggaattatcacaaaaggtcaaacaaaagtttgagtcgtcctcagaggcgtccgcggtgcatctagccggacaggttgatgaaattgtggataaggtcatcagcctagaaattgcagcttcttcacaaaatgctcaaatcaatagaatgaaaaatgaggcagacgaactacagaagcgcctggatagcttagaggacgagaaggcagctttgattgaggattctagcaagttgtctgaaagattgaagcaagttgaggaggttctgcagacaattcagcggattggaaagtctgtgcacagtgagaatggaaatattcaccagcaactaactgaagtagatgacagtcttaatgattttgtaaagaagttggatgcacattccactgatgaaatagtaaattcatcacaagatgattccggaattgcatgcaaatcaaaagatgaaggattattggatgcattagatgactctagcaaggcacataaggaagagccagatgaaactttagggtggcaacaactagatttgaatgggctagaggataaggataaaattctcttaaaagattatgcatccatccttcgtaactacaaagatacgcagaaacagcttttagaaattgagaagagaaatcgagaatatcatctcgaggcaatgtcagagatgaatgagttaaagagttccagtgcaacaaaagatgatgagattcgctctctcagacgaatgttgagctctttacaaaccaagctcaacaattctctacctcagcgttttgtggagtctgaagaatcatctgaagcaaatgcctctcctagtcttgaaaacaaaaatattgctgagacagaagaatacatgaagatacgtgaacatgaagaaccacatgacccatcattggaagataaattcagagcagaaattagcagaatactggaggaaaacctggacttctggttgagattcagtacatcatatcattatatgcagaagttccagaaatcatttgataaagcaaaagctgagatggataaacttacagatgccaaagcgcaggaaggctcagatgctgtgccttcttgtcagtcagctagaaaacaagagtcagctgtgcttgaaaagaagttgcgtggcttgagcactgatctgcaggtatggttggaaaagaatgtgctgctacaaggggaactagagagtagattctcattgctgtgcagcatagaagaggagatatcaaagatcacagcattgggccaaactgatgaagctcatttcactcctttccaggctgcaaagttccaaggagaggtgagcagtatgaagcaagagaacagcaaggttaccaaagagctacaaactgggatggaccatgtgaggagcctccaagtggaggttgggagggctcttttgaagctgagagagaatattgaactgtctataggaagaagaaaccgaacacaacatagcttcagatctctgtcaatgaaagctggagtacctcttcgaactttcctatttggtagtaagccaaagaaagcatcgctcttttcgtgcatgggtcctgtgatgccaaagccagttgctgacatgagggcagggccttttggatgagactggttagatcattagctatgtttttttttcctttttcttaatgttctacacgaatgatcatacatgttaatttaaatcatatgttgagtcttttataggttttgagaatgtaaaaaggatcgtgtaatctcttagcatttttttggaaaggaaatcttgttgttccctgacttgattttgtcttttcattgatgttgacttgtgaattgatttgtaatatgtatatcctcattccaaggtactgaaaaaaaatataataatgaataagcgtatggtgttacaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]