2024-09-29 10:35:04, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_015764786 1778 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group auxin-binding protein 4 (LOC4352396), mRNA. ACCESSION XM_015764786 VERSION XM_015764786.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029267.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015764786.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1778 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="12" gene 1..1778 /gene="LOC4352396" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 15 ESTs, 13 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns" /db_xref="GeneID:4352396" CDS 894..1514 /gene="LOC4352396" /codon_start=1 /product="auxin-binding protein 4" /protein_id="XP_015620272.1" /db_xref="GeneID:4352396" /translation="
METRTGPTAAGGHGAHLAGAGRGALLLALVVVSAAAFLPVAESSCPRDNSLVKDVSKMYQSNYGREGFSHITIAGALAHGMKEVEVWLQTFGPGQRTPIHRHSCEEVFVVLKGKGTLLLGSSSMKYPGQPQEIPVFQNSTFSVPVNDPHQVWNSDEHEDLQVLVIISRPPVKIFTYDDWSVPHTAAKLKFPYFWDEDCLPAPKDEL"
misc_feature 1041..1493 /gene="LOC4352396" /note="auxin-binding protein 1, cupin domain; Region: cupin_ABP1; cd02220" /db_xref="CDD:380349" misc_feature order(1044..1058,1110..1112,1134..1145,1149..1151, 1206..1208,1212..1214,1218..1220,1242..1244,1248..1250, 1290..1292,1296..1301,1305..1319,1380..1382,1386..1388, 1392..1397) /gene="LOC4352396" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380349" misc_feature order(1095..1097,1152..1154,1158..1160,1182..1187, 1191..1193,1197..1199,1209..1211,1215..1217,1338..1340, 1473..1475) /gene="LOC4352396" /note="active site" /db_xref="CDD:380349" ORIGIN
caggtttggaattctgatgagcatgaggatttgcaggttattgtggtcatatcgcgcccgcctatcaaagtgtgagtattcattgcttgaaaaaatttgttacaatcatgaatctttatagaattgtatcagttgtgtaattttttttttgtcagaactcagaatcgatcttcagaaggttgttagacatgctatatgtatacttctgtacctgattacacctgtaaatcttgaacatttttatgaagggtaataatgtttctgaacgttgatggcatttcttgtaggtttttctacgatgactggaatatgcctcacacggctgcaaaactgcagttccccatcttctgggacgaggaatgcttaattgcacctaaagatgaactctaggctataaactgcatattgttgttgtcatctttgttcaaggtgcaggctgtaattgcaatttcttgcccaatgttcagaatatgtacctgatagcttctgaaataagggacactacttcacaatgtttccatgataacaatgcttttatcgaatcattgattaaaaataatttctcaatttttcatcctaaacatctgatctgagcttagtagctttacagtttaacatggttgaaaatgtaacagaaacattcaggtagcaacaggcacactgattcagtagaaaaatagcacacacaaaaaaaaaactactgaagacactagcaaagtagcaagagaaagctactattcttttattttactttttaaggggaaaagttcacatctctctgcgtgtgggcccatgattgtgtggggcccattggtcatcgatttattttggagtaaggggaaagttaatttctactgcatttctcagttttcgagaggtctagaagaaaagagatggagactagaactggaccaactgccgccggcggccatggcgcccacctcgccggcgccggccgcggcgccctcctcctcgcgctcgtcgtcgtctctgccgccgccttcctccccgtagccgaatcgtcctgcccgcgagacaattcgcttgtgaaagatgttagcaaaatgtaccaaagcaactatggaagggaagggttctcacatataaccattgctggtgccctagctcatggaatgaaggaggtggaagtgtggcttcagacatttggaccagggcaaaggacgccgatccacaggcactcgtgcgaggaagtttttgtcgtcttgaaagggaaagggacactcttgctggggtcaagctcaatgaagtatccagggcagcctcaggagattcccgtctttcagaatagcacattctctgttcctgtaaatgatccgcaccaggtttggaattctgatgaacatgaggatttgcaggtgcttgtgatcatttcgcgcccacctgtcaagatatttacatatgacgattggagtgtgcctcatacagcagcaaaactgaagttcccctacttctgggatgaggactgcttaccagcaccgaaggatgaactctagtttctaaaccggctattgcagtgtatcatcttcattcaagatactgctggattgcggtcgatacttgctgtaactcttttcccttctctctaatgtgcagttctaaaatgtgttctcttgcttaatgtcaggacttatgtacttagagcttttgcagtaaggaccactgtaagtgtaaactagttacataataacgcttcactaatccagacattatctgtgtatataaataaatgcctacacagctggtttcttgttgattaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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