LOCUS       XM_015764423            5524 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group uncharacterized protein
            (LOC4352551), transcript variant X2, mRNA.
ACCESSION   XM_015764423
VERSION     XM_015764423.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089046) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015764423.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5524
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="12"
     gene            1..5524
                     /gene="LOC4352551"
                     /note="uncharacterized LOC4352551; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 550 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 42 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4352551"
     misc_feature    1
                     /gene="LOC4352551"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             46..5091
                     /gene="LOC4352551"
                     /codon_start=1
                     /product="uncharacterized protein isoform X2"
                     /protein_id="XP_015619909.1"
                     /db_xref="GeneID:4352551"
                     /translation="

MSAPRPAASAAAAAAANPSASTSQPPPPPPHPPPPPPPPPPPPPAAAAPSRSSSAAAAAVARVREEGEVSSGADDDEPLRARFTAPSNVSKYADASTQVLSANFPGKVAPSYKKTTRVNQGLFKPGTNRNLTWQKPVSSDNLVISFSDDDSGSDSGMSKQDKRGRKDSSQGTYKTGINVHTGIMREEAPQQKIHAAKVGSANWSAVPLTYRNSGVGRGLSATFARRDPPVRQVTPQKAIHKDGNVVGVSSAVHNLESLRHKIAARENELKVKRPMSPSLLKDSSFPTGQTRLPLEKIGFEASSIGACSHLNGPVGHDIRPIKRLKPNQECSNNQVLVNQIPPVPTGKSLGKSNVQPCERREHIENGIRDCNVNEAVHTVTTEPGGHHIGAIKSLSLSKMQHTVIPDADNHVTGKQHVKHAAPPTANEQSVVEDANTLVPITSVRAGANVEMSSIQVKDNMLSTWNGQHIMPADTSTVPNLRPQLGPGVENAENCGDQIVITGQNTSLLSLLEMEEFQERELEDAQEHRRKCEVEEREALRAYRRAQRALIEANERCAILRRKRELCSAQVHGFIAENSSLAQPLSIQNAGHGLVMPSVLNSQANADGQMPGNQGGRSGSPYPEESPQQPVDKHEARSHNFNDNSTPSDYMEDDLLPPSKRARSDCISNLEDHMEETIHVYPVENRQISGESVQDYELLEASLRSRLVERFGKKSYLNNSGEATEELSFGKVSEIEREKAYVGPLLQEADENVMTNIEGMVELGNDAHEKRADSSNAPSIGNYDHEENISSFGELCMPLSVTHPIIPSSAPQNAARHMKGLFPDLHKKASDYKNDCQTSNAASVATVRLPDVAKDNAKMHSTTRKDMDIVSGAVDPFWPFCMFELRGKCNDEECPWQHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQHILPVPTYRVGSNLIRADLNLIQSVLASSIWQYWQRGFCASFPFPLSVQRVLPSDAPSLQAGDDSSANFDRDRQLLNLRMLDSRKNKIVQGSVDAELFLEGALILYFGKINKPDRLKALLYLARAIEADPSTVILWVFYLHIYYQKDEGLGKDDMFSHAVQHNVCSYELWLMYINSRLRFDDRLDAYNDALSMLCQMTAVTDMELKDRSSFVLDIFLQMVYFLCMSGNVDKAISRIYGILPTATPDCSGDKLLADVISCLTISDRCIFWISCIYVSIYRKLPEEIIDQLEFLKDLPNSLVWSPIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDPSYLRLSQFLAVNHINCLATLEGFQSCANLLVKYMEEYPMCPHILVFSARLHRKYGSCPGLKGFDELLLGWPKEVQGIQYLWNQCAEHALADNIELAEKLLTRWFEEYGKDGDIQSGGATRPMEISNEESVRSSVSSIQEVGSGTSTSEDQIFWLLNLSLYRTIENNLQEAKVAMDKALKLAHGESYEHCIKEHAAIHTLEKTSSSTDVQTQATFSLISGYLVDQRNLPVRDLLSRRFMKNVKKHRLKRLIDETIGPTSANPALINSVLEVCYGPSLLPETIGEVKYLVDFVESVMEVLPANYRLALAVGKFMVKHCTGDDSISMGTRFWASSILINAIFRAVPVAPESVWLEGASLLEKLQAAETVKRFYQQATSVYPFSFKLWHSYLNSCKASGSSTESIAEAARQRGIELSVTPP"

     misc_feature    <1579..1740
                     /gene="LOC4352551"
                     /note="Trichohyalin-plectin-homology domain; Region: TPH;
                     pfam13868"
                     /db_xref="CDD:464007"
     misc_feature    2680..2739
                     /gene="LOC4352551"
                     /note="Putative zinc-finger domain; Region: zf-C3H1;
                     pfam10650"
                     /db_xref="CDD:431418"
     misc_feature    <3298..>3525
                     /gene="LOC4352551"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
     polyA_site      5524
                     /gene="LOC4352551"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gagcgcgaaggcaacgcgacgcgaccccgcccgcacacgctacccatgtcagccccgcgacccgcggcctccgcggcggcggcggcggccgcgaaccctagcgcgtccacctcgcagcctccccctcctcctcctcatccgccgcctcctcctccgcctccgcccccgcctccgcctgcggccgcggcgccctccaggtcttcgtcggctgcggcggcggcggtggccagggtgcgggaggagggagaggtctcctccggcgccgacgacgacgagcctctgcgggctcggttcactgctccatccaatgtttccaaatatgcggatgcttctactcaagtgttgtcagcaaattttcctggaaaagttgctccaagttataagaagacaacgagggtgaatcaagggcttttcaaacctggcaccaatcgaaaccttacttggcaaaagcctgtgtcaagtgataaccttgtgataagtttctctgatgatgatagtgggtccgactctggaatgtcaaagcaagataagagaggcaggaaagacagttcacaaggtacatataaaacagggattaatgtgcacactggaattatgagggaagaagcacctcaacagaagatccatgctgcaaaggttggatctgcaaattggtcagctgttccactaacatataggaattcaggggtaggcaggggattgagtgccacctttgctaggagagatccacctgttcggcaagtcactccccaaaaggccatccataaggatggaaatgttgtgggagtaagttcagcggttcataatttggaaagcttacgccacaaaattgctgctagggaaaatgaattgaaagtgaaaagaccaatgtcacctagtcttttgaaggactcaagttttcccactggtcagacaaggttacccttggaaaagataggatttgaagcttcaagcattggtgcatgctcacaccttaatggtcctgttggacatgatattagaccaattaaaaggttgaagcccaatcaggagtgctccaacaaccaagttcttgttaatcagataccacctgtacctactggcaagtcactggggaaaagcaatgtgcaaccttgtgaaagaagagagcatatcgaaaatggaattagggactgcaatgttaatgaagcagtgcatactgtaacaacagaaccgggtgggcatcatattggtgccattaagagcctttcattatccaaaatgcagcatacagttataccggatgctgacaaccatgttacaggtaaacaacatgttaagcatgcagcaccaccaactgctaatgagcaatctgtggtggaagatgctaacactctggtgcctataacttctgtccgagctggtgccaatgtagaaatgtcatctattcaagtgaaggataacatgctttctacttggaatgggcaacatataatgcctgctgatacatcaacagtgccaaacctgagaccacagttgggacctggagtggagaatgccgagaactgtggtgatcagatagttatcacaggtcagaacacatcattgctctctctgcttgagatggaggaatttcaagagagggagctggaggatgctcaagagcatagaaggaagtgcgaagtagaggaaagagaagctctaagagcttatcgcagagcacaaagagctttaattgaggccaatgaaaggtgtgccattcttcgcagaaaaagagagctttgctctgcacaagtccatggttttatcgctgaaaattcttctttggcacagcctttgagtattcagaatgctggacacggtcttgtaatgccatctgtgctcaactctcaagctaatgcagatggtcagatgcctggaaatcagggtggcaggtctggcagtccatacccagaggagtcccctcagcagccagttgataagcatgaggcacgctcacacaatttcaatgataacagcacaccttcagattacatggaggatgatcttctacccccctcaaagcgggcaagatcagattgtatttcaaatctggaagatcacatggaagaaactatacatgtttatcctgtggaaaacagacaaatttctggtgaaagtgtgcaggactatgagcttttggaagcttctttgagatcaaggttggtggagagatttgggaagaaatcatatttgaataattctggagaagccactgaagaactctcctttggaaaagtatctgagattgagcgtgagaaggcatatgtgggacctctgctacaggaggctgatgagaatgttatgacaaacattgaaggtatggtggagcttgggaatgatgcacatgaaaagagagctgattctagcaatgcgccttcaattggcaactatgatcatgaggaaaatatttcctcttttggagaattatgcatgccattgagcgtgactcatcccattattccttcttcagctccacaaaatgctgcaagacacatgaagggtttatttcctgatttacacaagaaagcttcagactacaaaaatgactgtcagaccagcaatgcagcctctgtagcaacggttcgtttgccagatgttgccaaggataatgctaagatgcactcaacaactagaaaggatatggacattgtgagtggtgcggttgatcccttctggcctttctgtatgtttgagcttcgaggaaaatgcaatgatgaagaatgtccatggcaacatgttgagcatcatgcttggagaaagtcaaagcacacaaagcattcaaagccctcattttcagggtggattccttatggtctgtttcagcatattctgcccgtgccaacttatcgtgttggttcaaatcttattagggctgatctgaacttgatccagtcggtgttggctagcagcatttggcagtattggcaaagggggttttgtgcttcctttccttttcctttatctgttcaaagggtgcttccatcagatgctccatccttacaggctggtgatgattcgagtgcaaattttgatagggacagacaactattgaatcttcgaatgctggatagtaggaagaataagattgtacagggatctgttgatgctgaactattcttagaaggggcactaattctgtattttggaaaaatcaacaaacctgataggctcaaggctcttttatatctagcacgtgctattgaggccgatccaagcacagttatcttgtgggtgttttatcttcatatttactatcaaaaggatgaaggactagggaaagatgacatgttttcccatgcggttcaacacaatgtttgctcctatgaactatggcttatgtacattaacagcaggttgcgctttgatgatcggttggatgcttacaatgatgctttgagcatgctctgccaaatgacagctgtcacagacatggaattgaaagatagaagttcttttgtcctagatatcttcttacagatggtttacttcttgtgcatgtctggaaatgtggacaaagcaatttccaggatttatgggattctgccgactgcaactcccgactgttctggtgacaagttgctcgctgatgtcatttcttgcttgaccatttctgacagatgcatattttggatttcctgcatatatgtctcaatttacaggaaacttccagaggaaattatagatcaactggaatttcttaaggatttacctaattcgttagtatggtctcctattgaacttacagtagataacagaagtcagattttagtactattgaactatgctgctggtaagattgctgtagatattaatgaaacggttaaaaacggggatccatcttacctgaggctctcacaattcctcgctgttaaccacattaattgtctagctactcttgaaggcttccaatcttgtgctaatctgctggtgaagtatatggaggagtatccaatgtgtcctcatattcttgttttctcagctcggctacatagaaagtacggttcatgtcctggtctgaaaggatttgatgaattgctcctgggttggcctaaagaggtgcaaggaattcagtatctgtggaaccaatgtgctgagcatgctctggcagataatatcgagctagctgagaagttgctgactcgctggtttgaagaatatggaaaagatggtgatattcaaagtggtggtgctactagaccaatggagatcagcaatgaagagtctgtacggtcatcagtttcctctatacaagaagttggttctggtacatctacatcagaggatcaaatcttttggctattaaacctctcattatacaggacgatagagaacaatctacaggaagcaaaagttgctatggacaaagcattgaagttagcacatggggagagctatgagcactgtataaaggaacatgctgcaattcacacactggagaaaacgtcatcatctacagatgttcaaactcaagcaaccttcagtcttatcagtggttatcttgtagatcaacggaacttgcccgtgagggatctgctgtcaagaaggtttatgaagaatgttaagaagcacaggcttaagcggttgatagatgagactataggcccaacttccgcgaatcctgctctgataaactctgtcctcgaggtgtgctacggtccatctctccttccagaaacgataggtgaagttaagtacctggtcgattttgttgaatcagtgatggaggttcttcctgcaaactaccgtctggccttggcggttggtaaattcatggttaagcattgcacaggtgatgactctatttccatgggcacccgattctgggccagctccattctgatcaacgccattttccgagctgttcctgtcgcaccagaatcagtatggttagaaggtgccagtctccttgagaaacttcaggcagcagagaccgtgaagagattctaccagcaggcaacctcagtctacccgttctccttcaagctatggcactcttacttgaactcctgtaaggccagtgggagcagcacagagagcatcgccgaagctgcgaggcaacggggcatcgagctgagcgtaacgcctccctagcaggggccctcttggtttgatgacgtggcgattcgccaggtggagctgtagttagtgttgtgtttactggaaagtgagagtagatacacccggtggtgatggggcgactggataattttcttcttgtttaggcacaggtttagtgacacataggcggtggataccaaccataccatacatcacagcagctgctgttactgatggtgtgacttatggatcaaaaaaagaggatataggcatacggttttgcatgcccccacagagtggagttttggctgactcgagagtatgatgtttttgtaggcagatttcttgatctgtttcaggtttatgtttgtttaccctgttgcagtgtatggcatgcacaactgttgtttttttgaaacattatgatcgatcaatcatgaatgtgaatgagaattttgttaaacca

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