2024-09-29 10:38:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_015764422 5579 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352551 (LOC4352551), transcript variant X1, mRNA. ACCESSION XM_015764422 VERSION XM_015764422.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029267.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015764422.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5579 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="12" gene 1..5579 /gene="LOC4352551" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns" /db_xref="GeneID:4352551" CDS 56..5146 /gene="LOC4352551" /codon_start=1 /product="uncharacterized protein LOC4352551 isoform X1" /protein_id="XP_015619908.1" /db_xref="GeneID:4352551" /translation="
MSAPRPAASAAAAAAANPSASTSQPPPPPPHPPPPPPPPPPPPPAAAAPSRSSSAAAAAVARVREEGEVSSGADDDEPLRARFTAPSNVSKYADASTQVLSANFPGKGSNSLSLSSAFPHKTVAPSYKKTTRVNQGLFKPGTNRNLTWQKPVSSDNLVISFSDDDSGSDSGMSKQDKRGRKDSSQGTYKTGINVHTGIMREEAPQQKIHAAKVGSANWSAVPLTYRNSGVGRGLSATFARRDPPVRQVTPQKAIHKDGNVVGVSSAVHNLESLRHKIAARENELKVKRPMSPSLLKDSSFPTGQTRLPLEKIGFEASSIGACSHLNGPVGHDIRPIKRLKPNQECSNNQVLVNQIPPVPTGKSLGKSNVQPCERREHIENGIRDCNVNEAVHTVTTEPGGHHIGAIKSLSLSKMQHTVIPDADNHVTGKQHVKHAAPPTANEQSVVEDANTLVPITSVRAGANVEMSSIQVKDNMLSTWNGQHIMPADTSTVPNLRPQLGPGVENAENCGDQIVITGQNTSLLSLLEMEEFQERELEDAQEHRRKCEVEEREALRAYRRAQRALIEANERCAILRRKRELCSAQVHGFIAENSSLAQPLSIQNAGHGLVMPSVLNSQANADGQMPGNQGGRSGSPYPEESPQQPVDKHEARSHNFNDNSTPSDYMEDDLLPPSKRARSDCISNLEDHMEETIHVYPVENRQISGESVQDYELLEASLRSRLVERFGKKSYLNNSGEATEELSFGKVSEIEREKAYVGPLLQEADENVMTNIEGMVELGNDAHEKRADSSNAPSIGNYDHEENISSFGELCMPLSVTHPIIPSSAPQNAARHMKGLFPDLHKKASDYKNDCQTSNAASVATVRLPDVAKDNAKMHSTTRKDMDIVSGAVDPFWPFCMFELRGKCNDEECPWQHVEHHAWRKSKHTKHSKPSFSGWIPYGLFQHILPVPTYRVGSNLIRADLNLIQSVLASSIWQYWQRGFCASFPFPLSVQRVLPSDAPSLQAGDDSSANFDRDRQLLNLRMLDSRKNKIVQGSVDAELFLEGALILYFGKINKPDRLKALLYLARAIEADPSTVILWVFYLHIYYQKDEGLGKDDMFSHAVQHNVCSYELWLMYINSRLRFDDRLDAYNDALSMLCQMTAVTDMELKDRSSFVLDIFLQMVYFLCMSGNVDKAISRIYGILPTATPDCSGDKLLADVISCLTISDRCIFWISCIYVSIYRKLPEEIIDQLEFLKDLPNSLVWSPIELTVDNRSQILVLLNYAAGKIAVDINETVKNGDPSYLRLSQFLAVNHINCLATLEGFQSCANLLVKYMEEYPMCPHILVFSARLHRKYGSCPGLKGFDELLLGWPKEVQGIQYLWNQCAEHALADNIELAEKLLTRWFEEYGKDGDIQSGGATRPMEISNEESVRSSVSSIQEVGSGTSTSEDQIFWLLNLSLYRTIENNLQEAKVAMDKALKLAHGESYEHCIKEHAAIHTLEKTSSSTDVQTQATFSLISGYLVDQRNLPVRDLLSRRFMKNVKKHRLKRLIDETIGPTSANPALINSVLEVCYGPSLLPETIGEVKYLVDFVESVMEVLPANYRLALAVGKFMVKHCTGDDSISMGTRFWASSILINAIFRAVPVAPESVWLEGASLLEKLQAAETVKRFYQQATSVYPFSFKLWHSYLNSCKASGSSTESIAEAARQRGIELSVTPP"
misc_feature <1634..1795 /gene="LOC4352551" /note="Trichohyalin-plectin-homology domain; Region: TPH; pfam13868" /db_xref="CDD:464007" misc_feature 2735..2794 /gene="LOC4352551" /note="Putative zinc-finger domain; Region: zf-C3H1; pfam10650" /db_xref="CDD:431418" misc_feature <3353..>3580 /gene="LOC4352551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:462472" ORIGIN
aagaagacgcgagcgcgaaggcaacgcgacgcgaccccgcccgcacacgctacccatgtcagccccgcgacccgcggcctccgcggcggcggcggcggccgcgaaccctagcgcgtccacctcgcagcctccccctcctcctcctcatccgccgcctcctcctccgcctccgcccccgcctccgcctgcggccgcggcgccctccaggtcttcgtcggctgcggcggcggcggtggccagggtgcgggaggagggagaggtctcctccggcgccgacgacgacgagcctctgcgggctcggttcactgctccatccaatgtttccaaatatgcggatgcttctactcaagtgttgtcagcaaattttcctggaaaaggcagtaatagcctgagtctctcaagtgcttttcctcacaaaacagttgctccaagttataagaagacaacgagggtgaatcaagggcttttcaaacctggcaccaatcgaaaccttacttggcaaaagcctgtgtcaagtgataaccttgtgataagtttctctgatgatgatagtgggtccgactctggaatgtcaaagcaagataagagaggcaggaaagacagttcacaaggtacatataaaacagggattaatgtgcacactggaattatgagggaagaagcacctcaacagaagatccatgctgcaaaggttggatctgcaaattggtcagctgttccactaacatataggaattcaggggtaggcaggggattgagtgccacctttgctaggagagatccacctgttcggcaagtcactccccaaaaggccatccataaggatggaaatgttgtgggagtaagttcagcggttcataatttggaaagcttacgccacaaaattgctgctagggaaaatgaattgaaagtgaaaagaccaatgtcacctagtcttttgaaggactcaagttttcccactggtcagacaaggttacccttggaaaagataggatttgaagcttcaagcattggtgcatgctcacaccttaatggtcctgttggacatgatattagaccaattaaaaggttgaagcccaatcaggagtgctccaacaaccaagttcttgttaatcagataccacctgtacctactggcaagtcactggggaaaagcaatgtgcaaccttgtgaaagaagagagcatatcgaaaatggaattagggactgcaatgttaatgaagcagtgcatactgtaacaacagaaccgggtgggcatcatattggtgccattaagagcctttcattatccaaaatgcagcatacagttataccggatgctgacaaccatgttacaggtaaacaacatgttaagcatgcagcaccaccaactgctaatgagcaatctgtggtggaagatgctaacactctggtgcctataacttctgtccgagctggtgccaatgtagaaatgtcatctattcaagtgaaggataacatgctttctacttggaatgggcaacatataatgcctgctgatacatcaacagtgccaaacctgagaccacagttgggacctggagtggagaatgccgagaactgtggtgatcagatagttatcacaggtcagaacacatcattgctctctctgcttgagatggaggaatttcaagagagggagctggaggatgctcaagagcatagaaggaagtgcgaagtagaggaaagagaagctctaagagcttatcgcagagcacaaagagctttaattgaggccaatgaaaggtgtgccattcttcgcagaaaaagagagctttgctctgcacaagtccatggttttatcgctgaaaattcttctttggcacagcctttgagtattcagaatgctggacacggtcttgtaatgccatctgtgctcaactctcaagctaatgcagatggtcagatgcctggaaatcagggtggcaggtctggcagtccatacccagaggagtcccctcagcagccagttgataagcatgaggcacgctcacacaatttcaatgataacagcacaccttcagattacatggaggatgatcttctacccccctcaaagcgggcaagatcagattgtatttcaaatctggaagatcacatggaagaaactatacatgtttatcctgtggaaaacagacaaatttctggtgaaagtgtgcaggactatgagcttttggaagcttctttgagatcaaggttggtggagagatttgggaagaaatcatatttgaataattctggagaagccactgaagaactctcctttggaaaagtatctgagattgagcgtgagaaggcatatgtgggacctctgctacaggaggctgatgagaatgttatgacaaacattgaaggtatggtggagcttgggaatgatgcacatgaaaagagagctgattctagcaatgcgccttcaattggcaactatgatcatgaggaaaatatttcctcttttggagaattatgcatgccattgagcgtgactcatcccattattccttcttcagctccacaaaatgctgcaagacacatgaagggtttatttcctgatttacacaagaaagcttcagactacaaaaatgactgtcagaccagcaatgcagcctctgtagcaacggttcgtttgccagatgttgccaaggataatgctaagatgcactcaacaactagaaaggatatggacattgtgagtggtgcggttgatcccttctggcctttctgtatgtttgagcttcgaggaaaatgcaatgatgaagaatgtccatggcaacatgttgagcatcatgcttggagaaagtcaaagcacacaaagcattcaaagccctcattttcagggtggattccttatggtctgtttcagcatattctgcccgtgccaacttatcgtgttggttcaaatcttattagggctgatctgaacttgatccagtcggtgttggctagcagcatttggcagtattggcaaagggggttttgtgcttcctttccttttcctttatctgttcaaagggtgcttccatcagatgctccatccttacaggctggtgatgattcgagtgcaaattttgatagggacagacaactattgaatcttcgaatgctggatagtaggaagaataagattgtacagggatctgttgatgctgaactattcttagaaggggcactaattctgtattttggaaaaatcaacaaacctgataggctcaaggctcttttatatctagcacgtgctattgaggccgatccaagcacagttatcttgtgggtgttttatcttcatatttactatcaaaaggatgaaggactagggaaagatgacatgttttcccatgcggttcaacacaatgtttgctcctatgaactatggcttatgtacattaacagcaggttgcgctttgatgatcggttggatgcttacaatgatgctttgagcatgctctgccaaatgacagctgtcacagacatggaattgaaagatagaagttcttttgtcctagatatcttcttacagatggtttacttcttgtgcatgtctggaaatgtggacaaagcaatttccaggatttatgggattctgccgactgcaactcccgactgttctggtgacaagttgctcgctgatgtcatttcttgcttgaccatttctgacagatgcatattttggatttcctgcatatatgtctcaatttacaggaaacttccagaggaaattatagatcaactggaatttcttaaggatttacctaattcgttagtatggtctcctattgaacttacagtagataacagaagtcagattttagtactattgaactatgctgctggtaagattgctgtagatattaatgaaacggttaaaaacggggatccatcttacctgaggctctcacaattcctcgctgttaaccacattaattgtctagctactcttgaaggcttccaatcttgtgctaatctgctggtgaagtatatggaggagtatccaatgtgtcctcatattcttgttttctcagctcggctacatagaaagtacggttcatgtcctggtctgaaaggatttgatgaattgctcctgggttggcctaaagaggtgcaaggaattcagtatctgtggaaccaatgtgctgagcatgctctggcagataatatcgagctagctgagaagttgctgactcgctggtttgaagaatatggaaaagatggtgatattcaaagtggtggtgctactagaccaatggagatcagcaatgaagagtctgtacggtcatcagtttcctctatacaagaagttggttctggtacatctacatcagaggatcaaatcttttggctattaaacctctcattatacaggacgatagagaacaatctacaggaagcaaaagttgctatggacaaagcattgaagttagcacatggggagagctatgagcactgtataaaggaacatgctgcaattcacacactggagaaaacgtcatcatctacagatgttcaaactcaagcaaccttcagtcttatcagtggttatcttgtagatcaacggaacttgcccgtgagggatctgctgtcaagaaggtttatgaagaatgttaagaagcacaggcttaagcggttgatagatgagactataggcccaacttccgcgaatcctgctctgataaactctgtcctcgaggtgtgctacggtccatctctccttccagaaacgataggtgaagttaagtacctggtcgattttgttgaatcagtgatggaggttcttcctgcaaactaccgtctggccttggcggttggtaaattcatggttaagcattgcacaggtgatgactctatttccatgggcacccgattctgggccagctccattctgatcaacgccattttccgagctgttcctgtcgcaccagaatcagtatggttagaaggtgccagtctccttgagaaacttcaggcagcagagaccgtgaagagattctaccagcaggcaacctcagtctacccgttctccttcaagctatggcactcttacttgaactcctgtaaggccagtgggagcagcacagagagcatcgccgaagctgcgaggcaacggggcatcgagctgagcgtaacgcctccctagcaggggccctcttggtttgatgacgtggcgattcgccaggtggagctgtagttagtgttgtgtttactggaaagtgagagtagatacacccggtggtgatggggcgactggataattttcttcttgtttaggcacaggtttagtgacacataggcggtggataccaaccataccatacatcacagcagctgctgttactgatggtgtgacttatggatcaaaaaaagaggatataggcatacggttttgcatgcccccacagagtggagttttggctgactcgagagtatgatgtttttgtaggcagatttcttgatctgtttcaggtttatgtttgtttaccctgttgcagtgtatggcatgcacaactgttgtttttttgaaacattatgatcgatcaatcatgaatgtgaatgagaattttgttaaacca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]