LOCUS       XM_015763187             866 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group protein LOWER TEMPERATURE 1
            (LOC4352144), mRNA.
ACCESSION   XM_015763187
VERSION     XM_015763187.2
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089046) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015763187.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="12"
     gene            1..866
                     /gene="LOC4352144"
                     /note="protein LOWER TEMPERATURE 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 52 ESTs, 476 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 130 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4352144"
     misc_feature    1
                     /gene="LOC4352144"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             183..719
                     /gene="LOC4352144"
                     /codon_start=1
                     /product="protein LOWER TEMPERATURE 1"
                     /protein_id="XP_015618673.1"
                     /db_xref="GeneID:4352144"
                     /translation="

MGADGGGGGGRKSSSPAGKPAEAARAGSLLAGLPSRGNFVADSIASSMGGLPVYVCLHDTAPPEGQVIDTDTTNILIRSLQLSKQKNEAKDVGSRTPGESSKGKRSASRLLDGKNPSKRANTGSTAGSSAHGELGSVFSEQTLQSFTVEKLRILLKERGLSPKGKKDELIARLIESSE"

     misc_feature    264..440
                     /gene="LOC4352144"
                     /note="Det1 complexing ubiquitin ligase; Region: DDA1;
                     pfam10172"
                     /db_xref="CDD:401980"
     misc_feature    390..>716
                     /gene="LOC4352144"
                     /note="poly [ADP-ribose] polymerase; Provisional; Region:
                     PLN03124"
                     /db_xref="CDD:215591"
     misc_feature    609..707
                     /gene="LOC4352144"
                     /note="SAP domain; Region: SAP; pfam02037"
                     /db_xref="CDD:460424"
     polyA_site      866
                     /gene="LOC4352144"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

aaaattcttgagaaaagctccaacctttcctcttcttcctcttcccctccctctcgctgcctgccgcctctgcttgctcagatcttctcctctccttcccggattccaccctcagttgttgtctcacagtctccgaatcgctgggcggtggagccattggtgctcacccacgggcacgggcgatgggcgccgatggcggcggcggcggaggccggaagagctcgtcgccggccgggaagccggcggaggcggcacgggcggggagcctgctcgccggactcccctcgcggggcaacttcgtcgccgacagcatcgcgtccagcatgggaggcctcccggtttatgtctgcctgcacgacaccgctcctccagagggacaagttatagacacagacaccacaaacattttaatcagatctctccagttgagcaaacagaaaaatgaggcaaaagatgtaggatcaaggactccaggagaaagcagcaaggggaaaaggtctgcttccagacttttagatggcaagaatccatctaaaagagctaacactggcagcacggcagggtcatctgcccatggggaattgggatctgttttttctgagcagacgctccaatcatttacggtggagaagttgcgtattcttctgaaagagagagggctctcaccaaaaggcaaaaaggatgaactgatcgcccgcttaattgagtcctcggagtgatctgaactgcgatcggaacctcattttgttggatgttgtaccgtagtgacgatcatacaccatgcaagtgaacttctatcgcagacctcatgtaagcatatatttcatacagtgccgaaatgaaagatctggctgatagtttccaca

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