LOCUS       NM_001428109            3073 bp    mRNA    linear   PLN 10-APR-2024
DEFINITION  Oryza sativa Japonica Group protein argonaute 4A-like (LOC4324438),
            mRNA.
ACCESSION   NM_001428109 XM_015765587
VERSION     NM_001428109.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G.,
            Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A.,
            Soderlund,C. and Wang,G.L.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK121307.1, AK064813.1, CF307494.1, CF323377.1, CB646880.1 and
            CI175396.1.
            
            On Feb 15, 2024 this sequence version replaced XM_015765587.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK121307.1, AK064813.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03003383, SAMN08474110
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1108              AK121307.1         2-1109
            1109-1675           AK064813.1         1122-1688
            1676-2131           CF307494.1         189-644
            2132-2309           CF323377.1         115-292
            2310-2695           CB646880.1         372-757             c
            2696-3073           CI175396.1         1-378
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..3073
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /note="protein argonaute 4A-like"
                     /db_xref="GeneID:4324438"
     exon            1..97
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            98..135
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    130..132
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /note="upstream in-frame stop codon"
     exon            136..369
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     CDS             148..2862
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /note="P0038F12.13; putative zwille protein;
                     LOC_Os01g16870"
                     /codon_start=1
                     /product="protein argonaute 4A"
                     /protein_id="NP_001415038.1"
                     /db_xref="GeneID:4324438"
                     /translation="

MESNSGEIEELPPPPPLPPNAEPIKTDDTKKLSKPKRALMARSGCGKKGQPIQLLTNHFKVSLKAADEFFHHYYVNLKYEDDRPVDGKGIGRKVLDKLQQTYASELANKDFAYDGEKSLFTIGALPQVNNEFTVVLEDFNTGKSSANGGSPGNDSPGNDRKRVRRPYQTKTFKVELNFAAKIPMSAIAQALRGQESENTQEAIRVIDIILRQHSAKQGCLLVRQSFFHNNPSNFVDLGGGVMGCRGFHSSFRATQSGLSLNIDVSTTMIVKPGPVVDFLLANQKVDHPNKIDWAKAKRALKNLRIKTSPANTEYKIVGLSERNCYEQMFTLKQRNGDGEPEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIELCSLVPLQRYTKALSTLQRSSLVEKSRQKPEERMSVLSDVLKRSNYDSEPMLNSCGISIARGFTQVAGRVLQAPKLKAGNGEDLFARNGRWNFNNKRLIKASSIEKWAVVNFSARCNIRDLVRDIIKCGGMKGIKVEDPFDVIEEDPSMRRAPAARRVDGMIDKMQKKLPGQPKFLLCVLAERKNSDIYGPWKRKCLAEFGIITQCVAPTRVNDQYITNVLLKINAKLGGLNSLLQIETSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLVSKYRASVRSQSPKLEMIDGLFKPQGAQEDDGLIRELLVDFYTSTGKRKPDQVIIFRDGVSESQFTQVLNIELDQIIEACKFLDENWSPKFTLIVAQKNHHTKFFVPGSQNNVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSSMFFC"

     misc_feature    148..246
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9SDG8.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    574..645
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9SDG8.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    2758..2817
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9SDG8.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            370..575
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            576..797
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            798..934
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1032
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1130
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1293
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1410
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..1518
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1581
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..1695
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1696..1861
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1862..1974
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1975..2112
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2243
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2244..2309
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..2373
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2374..2485
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2486..2559
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2560..2654
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2655..2686
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2687..3058
                     /gene="LOC4324438"
                     /gene_synonym="AGO4A; OsAGO4a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaggcgttcgagtttcgagaggagggaggggggacaaggaggaggagcgcaccaccctctcggagaggtcgcctccgttcttgcatcgttttctttggatagggcagcgctttgacagctttggggagttagtcgagaagtgtgcacatggagtccaacagtggtgaaatcgaggagttgccacctcccccacctttgccaccaaatgctgagccaattaaaactgatgatacaaaaaagttatcaaaacctaagagggccttgatggctcgctctggttgtggcaaaaaagggcagccgatacagctgctgacgaaccacttcaaggtttcactgaaggcagcagacgaatttttccatcactactatgttaatctgaagtatgaggatgatagaccagtggatggaaagggcataggtagaaaggtgctggacaaactccagcagacctatgcgtctgagctggcaaataaagattttgcatacgatggtgagaagagcctgttcaccattggtgctcttcctcaagtgaacaatgagttcacggtagttctggaagacttcaacactggaaagtcatctgcaaatggtggcagccctggcaatgacagtccaggaaatgacaggaaaagggttagaaggccatatcagacaaaaacttttaaagttgagctgaactttgcagcaaaaattcctatgagcgccattgctcaggccttgagaggccaggaatctgaaaacacccaagaagcaattcgtgttattgatatcatattaagacagcattccgcaaaacagggttgccttttggttcgccaatcctttttccataacaatccttcaaattttgttgacttgggtggtggtgtgatgggctgtaggggattccattcaagcttccgagctacacagagtggactttcactcaatatcgatgtgtccacaacgatgattgtgaaacctggtcctgtggtagattttctacttgccaaccagaaggttgatcacccaaacaaaattgactgggcaaaggccaagcgtgctctgaagaatttaaggataaaaacaagtccagcaaatactgaatacaagattgttggtttgagtgagagaaactgctatgaacaaatgttcactttgaagcaaagaaatggtgatggtgaacctgaaggtgtggaagtatctgtttacgagtactttgtgaagaatcggggcatagagttgagatactctggtgattttccctgtatcaatgtggggaaaccaaaacggccaacttattttccaattgagctctgctctcttgtgcctttgcaaaggtataccaaggctttgagtacactacagaggtcttcgcttgttgagaagtccaggcagaaacctgaagaaaggatgtcagttttgtctgatgtgctgaaacgcagcaactatgattcagagcctatgttgaattcttgtggtatttcaattgctcgaggttttacacaagttgctggcagggtgctgcaggcccccaagctaaaagctggaaatggtgaagatctttttgcacgtaatgggcggtggaactttaataataagaggctcattaaggctagcagtatcgagaaatgggcagttgttaacttctctgcacggtgtaatattagggatcttgtccgagacatcatcaagtgtggtggcatgaaaggaattaaagtagaagatccatttgatgtcattgaggaggacccttcaatgcgacgagctcctgctgcaagaagggtagatggcatgattgacaagatgcaaaaaaagcttcctggacaaccaaagtttctgctctgtgttcttgctgagaggaagaattcagatatttatgggccctggaagcggaaatgtcttgctgaatttgggattattacacaatgtgtggcccctactagggtcaatgatcagtatattacaaatgtactgttaaagataaatgcaaagcttggtggcttgaactccctgcttcaaattgaaacatccccttccattcctcttgtatccaaggtcccgacaataatattgggaatggatgtttcccatggatcacctggacagtctgatataccttcaattgctgcggtcgttagttctcgtgaatggcctcttgtatcaaaatacagggcttcagtccgttctcagtcacctaagttagaaatgattgatggactatttaagccacaaggagctcaggaagatgatggcctcattcgggagttattagttgacttctataccagtactggtaaacgtaagcctgatcaagtcattatcttcagggatggggtcagtgagagccagtttacccaggtgctgaacattgagctggatcaaataattgaggcatgcaagtttcttgacgaaaactggtctccaaagtttacactgattgttgcacagaagaatcatcataccaaattttttgtgcctggatctcaaaataacgttcctcctggtactgttgtggacaacgcagtctgtcatccaaggaacaatgacttctacatgtgtgcgcacgctggaatgattggaactacaaggcctacacattatcatatccttcatgatgagataggcttctctgctgacgatcttcaggagttggtccactccctttcctatgtctaccagaggagcactacagccatatcagtcgttgcacccatttgctacgcgcatctcgctgctgctcaggtcagccagttcatcaagttcgacgagatgtcggagacgtcgtcgagccatggtggccatacctcggcgggcagcgctccggtgcccgagctgcctcgcctgcataacaaagtcaggagctccatgttcttctgctgagcagccgcttggctgctatgttatggcctgaacttgtggatgttttggtagtcttgtttatgtcgtgtttgtttaagtaccagctggggggtggatgttattaggctggatgccgcacttctgaacctgttaggataactactgaacctgtccatcttaatcgcagcttgttccatgctctgctttgctgcccttaaaaaaaaaaaaaaaa

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