2024-09-29 10:35:25, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001428071 1306 bp mRNA linear PLN 14-FEB-2024 DEFINITION Oryza sativa Japonica Group UBP1-associated proteins 1C (LOC4324202), mRNA. ACCESSION NM_001428071 XM_015769874 VERSION NM_001428071.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1306) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK059387.1, AK103402.1 and CI055713.1. On Feb 14, 2024 this sequence version replaced XM_015769874.1. ##Evidence-Data-START## Transcript exon combination :: AK059387.1, AK103402.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMD00008650, SAMD00020310 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-277 AK059387.1 5-281 278-765 AK103402.1 242-729 766-1306 CI055713.1 1-541 FEATURES Location/Qualifiers source 1..1306 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..1306 /gene="LOC4324202" /note="UBP1-associated proteins 1C" /db_xref="GeneID:4324202" exon 1..195 /gene="LOC4324202" /inference="alignment:Splign:2.1.0" misc_feature 52..54 /gene="LOC4324202" /note="upstream in-frame stop codon" CDS 109..1023 /gene="LOC4324202" /note="Os01g0583200; B1097D05.39; RNA-binding protein-like" /codon_start=1 /product="UBP1-associated proteins 1C" /protein_id="NP_001415000.1" /db_xref="GeneID:4324202" /translation="
MVWFQCEDCGDDLKKPKLAGHFRSCSAYRLSCIDCGEFFTQETVQGHTQCISEAEKYGPKGQNKASNNAQGKQDKPKPNADVDINVGLSTYPPWFCSLCKTTTTSKQTLLSHADGKKHRAKAKAYHASQKQANGVEQTPKETVGAPVTESAQVNNERSTENERGVDNDAAKRKRANDTTSEEPDNTKRQNNLSVNSGEVVQSSNEEAETKAKSKGTKDELVSSANLKGSKKQKIKWKKIITKVLQTNPDGVLKLKKLQKLVTKELLECGLTEDKEQMHAILMDKISSSSRFSVDGKRIRLVAKD"
exon 196..270 /gene="LOC4324202" /inference="alignment:Splign:2.1.0" exon 271..398 /gene="LOC4324202" /inference="alignment:Splign:2.1.0" exon 399..846 /gene="LOC4324202" /inference="alignment:Splign:2.1.0" exon 847..960 /gene="LOC4324202" /inference="alignment:Splign:2.1.0" exon 961..1306 /gene="LOC4324202" /inference="alignment:Splign:2.1.0" ORIGIN
acaaatcccaattgccgctgcgtccttcgcctcgcctcgcacccaaaaccctagcgccgcccgctcgtcggaggtgaagaggcggcggcggcggcggcagcgtcgacaatggtgtggttccagtgcgaggactgcggggacgacctcaagaagcccaagctcgccggccacttccgctcctgctccgcctacaggctctcctgcatcgactgcggcgagttcttcacccaggagaccgtccagggccacacccagtgcatctccgaggctgagaagtatggtcccaagggacagaacaaagcatccaacaatgcacagggcaagcaagacaagccaaagccaaatgctgatgttgatatcaatgtcgggctgtcgacatatcccccttggttctgcagcctttgcaagacgacaaccactagcaagcaaacactcttatcacatgcagatggcaagaagcacagggcaaaagcaaaagcctatcatgcttctcagaagcaagcaaatggagttgaacaaactcccaaggaaactgttggtgcacctgtgacagaatcagcacaagtaaacaatgagaggagtactgaaaatgaaagaggtgtggacaacgatgcagcaaagagaaagagagcaaatgatacgacctcagaagagccagataacacgaaaagacagaacaacttgagcgtgaacagtggagaagtggtacaatcttcaaatgaagaggcagaaaccaaagcaaagagcaagggtactaaagatgaattagttagtagtgccaaccttaaaggcagtaaaaagcagaaaatcaagtggaagaaaattattaccaaagtacttcagacgaatccagatggagttctgaagttaaagaagctacaaaagctagtaactaaggaacttctggaatgtggtctgacagaagataaggagcagatgcacgctatcttgatggataagatttcttcaagctccaggttttctgttgatggcaagcgcattagattggttgcaaaggattgagagtaatggatcatgccccctgacagctgattccttgtcgacagatcaatgatggtcttacagtttgttatggcgtaaagccgagttttggttctattatttatacactgtactgcctggatcatccatacgatccgtggaactgatgtgaattttgcatttgattgttttgggagcaacagccgatctgatcgcaaactgatcttggcaacacggcttgctatcaatgacatcaatatttcatggccttgttttgtgtattttaaattaaataagctgatac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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