2024-09-29 10:36:35, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001425708 1504 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group fructose-bisphosphate aldolase 2, cytoplasmic-like (LOC107277365), mRNA. ACCESSION NM_001425708 XM_015758300 VERSION NM_001425708.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1504) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK099184.1 and C98879.1. On Nov 24, 2023 this sequence version replaced XM_015758300.2. ##Evidence-Data-START## Transcript exon combination :: AK099184.1, AK071547.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04338660, SAMN04338661 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1469 AK099184.1 2-1470 1470-1504 C98879.1 410-444 FEATURES Location/Qualifiers source 1..1504 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="10" /map="10" gene 1..1504 /gene="LOC107277365" /gene_synonym="AldC-alpha; FBA2; OsJ_30817" /note="fructose-bisphosphate aldolase 2, cytoplasmic-like" /db_xref="GeneID:107277365" exon 1..88 /gene="LOC107277365" /gene_synonym="AldC-alpha; FBA2; OsJ_30817" /inference="alignment:Splign:2.1.0" CDS 61..1137 /gene="LOC107277365" /gene_synonym="AldC-alpha; FBA2; OsJ_30817" /EC_number="4.1.2.13" /note="cytoplasmic aldolase; Cytoplasmic aldolase-alpha; LOC_Os10g08022" /codon_start=1 /product="fructose-bisphosphate aldolase 2, cytoplasmic" /protein_id="NP_001412637.1" /db_xref="GeneID:107277365" /translation="
MSAYCGKYKDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEDNRRAFRELLFCTPGALQYISGVILFDETLYQKTKDGKPFVDVLKEAGALPGIKVDKGTIEVAGTDKETTTQGHDDLGKQCAKYYEAGARFAKWRAVLKIGPNQPSQLAIDLNAQGLACYAIICQENGLVPIVEPEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKVAPEVIAEYTVRTLQRTVPPAVPAIVFLSGGQSEEEATLNLNAMNKLSAKKPWSLSFSFGRALQQSTLKAWAGKTENVEKARAAFLVRCKANSEATLGTYKGDAVLGEGAAESLHVKDYKY"
misc_feature 1132..1134 /gene="LOC107277365" /gene_synonym="AldC-alpha; FBA2; OsJ_30817" /note="Necessary for preference for fructose 1,6-bisphosphate over fructose 1-phosphate. /evidence=ECO:0000250|UniProtKB:P00883; propagated from UniProtKB/Swiss-Prot (Q10A30.1); other site" exon 89..1490 /gene="LOC107277365" /gene_synonym="AldC-alpha; FBA2; OsJ_30817" /inference="alignment:Splign:2.1.0" ORIGIN
cctcttgaccccatttcggtgcttaaccaaactcaccataatatcagttcatccacaacaatgtcggcctactgcggcaagtacaaagatgagctcataaagaatgctgcctacattggcaccccgggcaagggtatcctcgctgcggacgagtccactggcaccatcggcaagcgcttcgccagcatcaatgttgagaacgtcgaggataaccgccgtgccttccgcgagctcctcttctgcacccctggcgccctccagtacatcagcggcgtgatcctcttcgacgagaccctctaccagaagaccaaggatggcaagcccttcgtcgatgtcctcaaggaggccggtgccctccccggcatcaaggtggacaagggcaccatcgaggtcgccggcaccgacaaggagaccaccacccagggccacgatgacctcggcaagcaatgcgccaagtactacgaggccggtgcccgcttcgccaagtggcgtgccgtcctcaagatcggacccaaccagccctcccagcttgccattgatctgaacgcccagggccttgcttgctacgccatcatctgccaggagaacgggctggtgccgatcgtcgagccggagatcctcgtcgatggccctcacgacatcgatcgatgcgcgtacgtctccgaggtggtcctcgccgcgtgctacaaggcgctgaacgagcaccatgtcctcctcgagggcaccctcctgaagcccaacatggtcaccccgggttccgacgccaagaaggtggcgccggaggtcatcgcggagtacaccgtccgcaccctccagaggaccgtccctcctgctgtgccggccatcgtcttcctctccggtggacagagcgaggaggaggcgacgctgaacctgaacgccatgaacaagctcagcgccaagaagccgtggtcgctgtccttctcctttggccgtgccctgcagcagagcacgctcaaggcctgggctggcaagacggagaacgtagagaaggccagggcggccttcctcgtcaggtgcaaggccaactccgaggctaccctgggtacttacaagggtgatgctgtcctcggcgagggcgctgctgaaagcctgcacgtcaaggactacaagtactgatctgcatcaggcgctggcctgctatggcttggctacctgatcgatttcccattctggggccgttacataatgcggttttgatatctagaggctctaacaggattcacaatttcggatcggaatttcagaatttttccctttccgatagatcgaaccctggagcacaatatatctgtggttatctaaaagccttgtcttaataatccagaacctttttttttcttgtaaaatatttgctgatgaacatcagctggcccggagtttttatttttatcaatcactttgtaactgtctgatttgcccggtgctgtgtgattttgttgaatgaaattaacttcacttctttgagtttaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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