2024-09-29 10:19:12, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001425680 1047 bp mRNA linear PLN 22-NOV-2023 DEFINITION Oryza sativa Japonica Group ADP-ribosylation factor-like protein 5 (LOC4350802), mRNA. ACCESSION NM_001425680 XM_015759677 VERSION NM_001425680.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1047) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK058229.1 and CI357670.1. On Nov 22, 2023 this sequence version replaced XM_015759677.2. ##Evidence-Data-START## Transcript exon combination :: AK058229.1, CF297302.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-940 AK058229.1 1-940 941-1047 CI357670.1 321-427 FEATURES Location/Qualifiers source 1..1047 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="11" /map="11" gene 1..1047 /gene="LOC4350802" /note="ADP-ribosylation factor-like protein 5" /db_xref="GeneID:4350802" exon 1..411 /gene="LOC4350802" /inference="alignment:Splign:2.1.0" CDS 220..774 /gene="LOC4350802" /note="Os11g0586900" /codon_start=1 /product="ADP-ribosylation factor-like protein 5" /protein_id="NP_001412609.1" /db_xref="GeneID:4350802" /translation="
MGAWMSRVWFLMFPAKEYKIVVVGLDNAGKTTTLYKLHLGEAVTAAPTIGSNVEEVVFKNIRFEVWDLGGQESLRTSWATYYRGTHAVIVVIDSTDRARINIIKDELFRLLQHGDLEGAVVLVFANKQDLKDAMSPAEITDALSLHSIKNHDWHIQASCAITGEGLYDGLGWIAQKVAGKATTS"
exon 412..1047 /gene="LOC4350802" /inference="alignment:Splign:2.1.0" ORIGIN
acgaatatccacacccaattcccttctcacctttcctcctccaaatccgacctcctcttgttcttcctcctccacccccatcgccgatccgatcccccaaactcgcagtccacttcctcccgcggagatccatccaccaccagccgccagccgccgcggcgcgagattcagattcgtcgttctcttggttgtttgaggaggaggaggaggagggacaagatgggggcgtggatgtcgcgggtgtggttcttgatgttcccggcgaaggagtacaagatcgtcgtcgtggggctcgacaacgccggcaagaccaccacgctctacaagctccacctcggggaggccgtcaccgccgcacccaccatcggcagcaacgtcgaggaggtcgtcttcaagaacatccgattcgaggtgtgggatttaggaggacaagagagtctacggacttcgtgggcaacatactacagaggaacccatgctgtcatcgttgtaattgacagcacagaccgtgctcggatcaacattatcaaggatgagctcttccggctgcttcagcatggggacctcgagggcgcagtagtcctcgtgttcgcaaacaagcaggatctcaaggacgccatgtcgccagctgagatcaccgacgctctctccctccacagcataaagaaccacgattggcacatacaggcctcatgcgcgatcaccggtgagggcctctacgacgggctcggctggatagctcagaaagtcgccggcaaggccacaacaagctgacccatagcgcctgtatttccatggatttgttggagctggcaggttgtgtttgttattgctgctgctgctgctaccacttcagtgtttatttatgtctcacatgtctgaaaaaaaccatgtctgtattccctaccaatctgaaatataaaagatcaaatttgtgcgcaatcaactacaagttgctccattttttttctcatattctctgatgatatacacacatcattttcctgtgcgcaattcttgaaattcagagttttgatatttctgcat
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]