2024-09-29 10:37:04, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001423938 1440 bp mRNA linear PLN 21-AUG-2023 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX8-like (LOC4348492), mRNA. ACCESSION NM_001423938 XM_015757745 VERSION NM_001423938.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI768414.1, AK243294.1 and CI201657.1. On Aug 21, 2023 this sequence version replaced XM_015757745.2. ##Evidence-Data-START## Transcript exon combination :: AK243294.1, CI768414.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-341 CI768414.1 2-342 342-1296 AK243294.1 343-1297 1297-1440 CI201657.1 407-550 FEATURES Location/Qualifiers source 1..1440 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="10" /map="10" gene 1..1440 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="homeobox-leucine zipper protein HOX8-like" /db_xref="GeneID:4348492" exon 1..266 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /inference="alignment:Splign:2.1.0" misc_feature 98..100 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="upstream in-frame stop codon" CDS 203..1120 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="HD-ZIP protein HOX8; Homeodomain transcription factor HOX8; LOC_Os10g23090; OSJNBa0095C06.14" /codon_start=1 /product="homeobox-leucine zipper protein HOX8" /protein_id="NP_001410867.1" /db_xref="GeneID:4348492" /translation="
MKRPSCRGSSMAIIHDTSDQQEDNMRSYMDGGGAAAYEEEEEEVEDDDGGGGGGGGGGGGGLGEKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRVDGQMSVKLEAVAADEHQPPPPPPPPPLAYNSKVVDGSTDSDSSAVFNEEASPYSGAAIDHHHHQTPASYDTAGFTSFFAPSTTLTSSLSFPSMFHASSHFDGHQELLVGGGGAGAVADADLGGAGFFAGDEHAGGLSWYGAEGW"
misc_feature 203..412 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="propagated from UniProtKB/Swiss-Prot (Q338Z7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 395..556 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 560..694 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="propagated from UniProtKB/Swiss-Prot (Q338Z7.1); Region: Leucine-zipper" misc_feature 560..685 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:460477" misc_feature 719..820 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /note="propagated from UniProtKB/Swiss-Prot (Q338Z7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 267..1440 /gene="LOC4348492" /gene_synonym="HOX8; OsHox8" /inference="alignment:Splign:2.1.0" ORIGIN
agtttgtttctctcttccttccttctctctctctctccattgccagctagctgctcttgtagatccaagctttcttcttcttcctcttgcagctagctagtgttcttcttcttcttcttctcactgttccctagtttcttcctctcagatccattttgtatatcttctctcttcattgttgattctctcaagaattgggctcatgaagaggcccagctgcagaggctcctccatggccatcatccatgacacctctgatcaacaagaggacaacatgaggtcgtacatggacggcggcggcgcggcggcgtacgaggaggaggaggaggaggttgaggacgacgacggcggcggcggcggcggcggcggcggcggcggtggggggctcggggagaagaagcggcggctggcggcggagcaggtgcgggcgctggagcggagcttcgaggcggacaacaagctggacccggagcggaaggcccggatcgcccgcgaccttcgcctccaccctcgccaggtcgccgtctggttccagaaccgccgcgcgaggtggaagaccaagcagatcgagcgcgacttcgccgccctccgctcccgccacgacgccctccgcctcgagtgcgacgccctccgccgcgacaaggacgccctcgccgccgagatcgccgacctccgggacagggtggacggccagatgtccgtcaagctggaggccgtggccgcggacgaacaccagccgcctccgccgccgccgccgccgccactggcgtataacagcaaggtggtggacggctcgacggacagcgactcgagcgcggtgttcaacgaggaggcgtcgccgtactccggcgcggccatcgaccaccaccaccaccaaactccggcgagctacgacacggcggggttcacctccttcttcgcgccatccaccacgctcacctcgtccctctccttcccttccatgttccacgcgtcatcgcatttcgatggccaccaagaactcctcgtcggcggcggcggcgccggcgcagtggccgacgccgacctcggaggcgccggattcttcgccggcgacgagcacgccggcggcctctcctggtacggcgccgagggttggtagaagctagagcttagctagctagcgagagagtgagctcagctaagcttaattagctggcttgattgcttgctttgtggctggttggtgacgccattgttgtaaattacggcattgttaagttgtacatgcatgcatgggggtaattataactaaagtcaatttctatagtttttactactactggctagggcacaagctagcagagacatatacttggaggaaggagacagtgattaatttttttttatggttttcttttacggttttaccctacaactttttgttcctattgacaaaaataaatgtgggccatacttgtc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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