2024-09-29 10:28:55, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001423101 1350 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX1-like (LOC4349388), mRNA. ACCESSION NM_001423101 XM_015757783 VERSION NM_001423101.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1350) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI311015.1, AK065404.1 and CI075183.1. On Jul 5, 2023 this sequence version replaced XM_015757783.1. ##Evidence-Data-START## Transcript exon combination :: AK065404.1, CB649192.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-122 CI311015.1 1-122 123-1095 AK065404.1 86-1058 1096-1350 CI075183.1 281-535 FEATURES Location/Qualifiers source 1..1350 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="10" /map="10" gene 1..1350 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="homeobox-leucine zipper protein HOX1-like" /db_xref="GeneID:4349388" exon 1..326 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /inference="alignment:Splign:2.1.0" misc_feature 116..118 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="upstream in-frame stop codon" CDS 128..1063 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="OSJNBb0089A17.12; HD-ZIP protein HOX1; Homeodomain transcription factor HOX1; LOC_Os10g41230" /codon_start=1 /product="homeobox-leucine zipper protein HOX1" /protein_id="NP_001410030.1" /db_xref="GeneID:4349388" /translation="
MEMMVHGRRDEQYGGLRLGLGLGLSLGVAGGAADDEQPPPRRGAAPPPQQQLCGWNGGGLFSSSSSDHRGRSAMMACHDVIEMPFLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASSPNSTLSSLSGKRGAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAATTTRNNSGAAPARPVPTRPWPPAAAQRSSA"
misc_feature 212..334 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature <272..526 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="HD-ZIP protein N terminus; Region: HD-ZIP_N; pfam04618" /db_xref="CDD:461370" misc_feature 416..607 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 593..757 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 761..895 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1); Region: Leucine-zipper" misc_feature 761..>850 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="homeobox associated leucin zipper; Region: HALZ; smart00340" /db_xref="CDD:128634" misc_feature 962..1060 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /note="propagated from UniProtKB/Swiss-Prot (Q7XC54.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 327..670 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /inference="alignment:Splign:2.1.0" exon 671..1350 /gene="LOC4349388" /gene_synonym="HOX1; OsHox1; OsJ_031189" /inference="alignment:Splign:2.1.0" ORIGIN
acgctttaaaagcttcctcctcctcctcgccaaccaccaccctcagtccctcacctccatttccatcaagcccaagaacgaactcaccacgctagtgttgagaagtggagagagttgagaggaatcaatggagatgatggttcatgggaggagagacgagcagtatggcgggctcaggctcgggcttgggcttgggctcagcctcggcgtcgccggtggtgcagccgacgacgagcagccgccgccgcgccgtggtgccgccccgccgccgcagcagcagctgtgcggctggaacggcggcggtctcttctcctcgtcttcctccgatcatcgggggaggtcggcgatgatggcgtgccacgacgtcatcgagatgccgttcctgcgggggatcgacgtgaaccgtgcgccggcggcagagacgaccacgacgacggcgagggggcccagctgcagcgaggaagacgaggagcccggcgcgtcctcccccaacagcacgctctccagcctcagcggcaagcgcggcgcaccatctgccgccaccgccgccgccgccgccgccagcgacgacgaggactccggcggcggatcccgcaagaagctccgcctctccaaggaccaagccgccgtcctcgaggacaccttcaaagagcacaacaccctcaatcccaagcagaaggcggcgctggcgaggcagctgaatctgaagccgcggcaggtggaggtgtggttccagaacaggagggcgaggacgaagctgaagcagacggaggtggactgcgagctgctcaagcgctgctgcgagacgctcaccgacgagaaccgccgcctccaccgcgagctccaggagctccgcgccctcaagctcgccaccgccgccgccgcgccgcaccacctctacggcgcccgcgtcccgccgcccaccaccctcaccatgtgcccctcctgcgagcgcgtcgcctccgcagccaccaccacccgcaacaactccggcgccgcccccgcgcggccggtgcccacccgcccgtggccgccggcggcggcgcagaggtcgtcggcgtagagaccccactactgattaattagttaattagagatgagtagtggctttttcttaattagcagggtattaattaattacttaattagggttggacccctgtagttttcttgtttatactacgtgtataatttagctctggttttgaactttttaattagtttcataatctttttttttcctatctctcacttcaccctgtttgttgtttactcagcaaagaatatggtgtctttgtataaagtgatgcatgaaatggatcataaaagttttcaatattaattccttca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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