2024-09-29 10:19:26, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422912 1201 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX6-like (LOC4347647), mRNA. ACCESSION NM_001422912 XM_015756830 VERSION NM_001422912.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1201) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK103160.1 and CI244407.1. On Jun 28, 2023 this sequence version replaced XM_015756830.2. ##Evidence-Data-START## Transcript exon combination :: AK103160.1, AK059755.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-651 AK103160.1 3-653 652-1201 CI244407.1 1-550 FEATURES Location/Qualifiers source 1..1201 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="9" /map="9" gene 1..1201 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="homeobox-leucine zipper protein HOX6-like" /db_xref="GeneID:4347647" exon 1..425 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /inference="alignment:Splign:2.1.0" CDS 72..821 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="putative homeodomain leucine zipper protein; HD-ZIP protein HOX6; Homeodomain transcription factor HOX6; LOC_Os09g35910" /codon_start=1 /product="homeobox-leucine zipper protein HOX6" /protein_id="NP_001409841.1" /db_xref="GeneID:4347647" /translation="
MDGEEDSEWMMMDVGGKGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGKYGDNAGDDARSGGVAGMKKEEFVGAGGAATLYSSAEGGGTTTTTTAKLMPHFGSDDVDAGLFLRPSSQHHPPPPHAGAGFTSSEPAADHQSFNFHSSWPSSTEQTCSSTPWWEFESE"
misc_feature 72..167 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="propagated from UniProtKB/Swiss-Prot (Q651Z5.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 159..320 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 324..458 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="propagated from UniProtKB/Swiss-Prot (Q651Z5.1); Region: Leucine-zipper" misc_feature 324..449 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:460477" misc_feature 651..818 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /note="propagated from UniProtKB/Swiss-Prot (Q651Z5.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 426..1195 /gene="LOC4347647" /gene_synonym="HOX6; OJ1439_F07.36; OsHox6" /inference="alignment:Splign:2.1.0" ORIGIN
ccatttcctcttcttcttcctccatatcacacggttttcgtccatcgatcatcagagctcgatcgggcgccatggatggggaggaggacagcgagtggatgatgatggacgttggagggaagggcgggaagggcggcggcggcggcggcgcggcggacaggaagaagcggttcagcgaggagcagatcaagtcgctggagtccatgttcgcgacgcagaccaagctggagccgaggcagaagctgcagctcgccagggagctcggcctgcagcctcgccaggtcgccatctggttccagaacaagcgcgcgcggtggaagtccaagcagctcgagcgcgagtactccgccctccgcgacgactacgacgccctcctctgcagctacgagtccctcaagaaggagaagctcgccctcatcaagcagctggagaagctggcggagatgctgcaggagccacgggggaagtacggcgataatgccggggacgacgcgcggtcgggcggcgtcgccggcatgaagaaggaggagttcgtcggcgcgggcggcgccgccacgctctactcgtcggccgagggtggcgggacgacgacgacgacgacggccaagttgatgccccacttcggcagcgacgacgtcgacgcggggctcttcctccggccgtcgtcgcagcatcatccgccgccgccgcacgccggtgccggcttcacgtcctccgagccggccgccgaccaccagtccttcaacttccactcgagctggccgtcgtccacggagcagacctgcagcagcacgccatggtgggaattcgagagcgagtgagcatccacactgttactactaggctactcatggatgatccatcgatcgccacagatcatgcatgccacgatcagaatttcaattcgccgcgaggacggatcaaacctgtactagatcggatcagagcaaacatagcagagaagatgatcaaaccaacagtgatgtgtacatagctttctgtagatcaaaaccccaggcagtctcctctccatccagccatcagcatgcgaaaattctctctctctttttttcccctccaagtcttactcgacttcgatgttgttatcacaacaccacatcatgtaatccagcaacacgccgagatgaaaaaaaggttaaaaagcttatagagttcgttcatttgatggatccaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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