2024-09-29 10:25:20, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422903 3602 bp mRNA linear PLN 28-JUN-2023 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein ROC7-like (LOC4344614), mRNA. ACCESSION NM_001422903 XM_015793053 VERSION NM_001422903.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK318563.1 and AP014964.1. On Jun 28, 2023 this sequence version replaced XM_015793053.2. ##Evidence-Data-START## Transcript exon combination :: AK318563.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMD00008650, SAMN02298005 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1168 AK318563.1 4-1171 1169-1171 AP014964.1 2036697-2036699 c 1172-3033 AK318563.1 1175-3036 3034-3037 AP014964.1 2034468-2034471 c 3038-3602 AK318563.1 3039-3603 FEATURES Location/Qualifiers source 1..3602 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="8" /map="8" gene 1..3602 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="homeobox-leucine zipper protein ROC7-like" /db_xref="GeneID:4344614" exon 1..491 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /inference="alignment:Splign:2.1.0" misc_feature 327..329 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="upstream in-frame stop codon" CDS 378..2735 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="putative OCL5 protein; Protein RICE OUTERMOST CELL-SPECIFIC 7; GLABRA 2-like homeobox protein 7; HD-ZIP protein ROC7; Homeodomain transcription factor ROC7; LOC_Os08g04190; P0680F05.46; GL2-type homeodomain protein; Os08g0136000" /codon_start=1 /product="homeobox-leucine zipper protein ROC7" /protein_id="NP_001409832.1" /db_xref="GeneID:4344614" /translation="
MMIPGRNMSPAMIGRPNGGGGGGGVAYASSSSALSLGQSLLDGHHHQLPSLLQQHHNGHHLLDQHQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPRKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDEIDRISAIAAKYVGKPAAAVSAAYPPLPPSNRSPLDHMGIPGAGADVFGADFDKPLVIELAVAAMEELVRMAQLGEPLWAPALGGEALGEEEYARTFPRGLGPKSPELRSEASRETAVVIMNHVSLVEMLMDVGQWTALFSSIVSRAATLEVLSTGVAGNHNGALQLMSAEFQMPSPLVPTRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILNAATSFWLPVPPSRVFDFLRDDSTRSEWDILSNGGVVQEMAHIANGRDHGNAVSLLRVNNANSNQSNMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAITGDNGVAPPCPR"
misc_feature 750..917 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature <942..>1142 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="rod shape-determining protein MreC; Region: MreC; cl46468" /db_xref="CDD:480808" misc_feature 1263..1955 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; Region: START_ArGLABRA2_like; cd08875" /db_xref="CDD:176884" misc_feature order(1347..1352,1377..1379,1440..1442,1446..1448, 1479..1481,1491..1493,1503..1505,1512..1517,1530..1535, 1614..1616,1620..1631,1638..1640,1647..1649,1653..1655, 1659..1661,1707..1709,1773..1775,1779..1790,1794..1796, 1830..1832,1836..1838,1842..1844,1848..1850,1854..1856, 1860..1862,1878..1880,1884..1892,1896..1904,1911..1916, 1923..1925) /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176884" exon 492..917 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /inference="alignment:Splign:2.1.0" exon 918..2375 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /inference="alignment:Splign:2.1.0" exon 2376..2776 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /inference="alignment:Splign:2.1.0" exon 2777..3602 /gene="LOC4344614" /gene_synonym="GL2-7; OJ1613_G04.7; OsJ_024924; Roc7" /inference="alignment:Splign:2.1.0" ORIGIN
gccgccgccaccgccgcactcttcttcctcctcacatcactccactctgatctctctctttcagacagtagcaagagcagcagcagagagagagagatttttatgtgtgttcttgacgactgcgtgatcggctgtgccgccagatatagatagaccgtacaactgcagcgctagctatatatatgtttcgagtggggtgtgtgtttgtatatcgattgttgatttgttggtagatctgagctctgcgagtgttgcttcgtccatggtggatctctagctatttagggttgttggtctagctagatagctatatctttctctctctctagtactggtgtgtgcatatatttgtatatgctctgagggagagggagaggatgatgatccctggccggaacatgtcgccggcgatgatcggccggcccaacggcggcggcggcggcggcggcgtcgcctacgcttcttcttcctcggcgctctccctcggccagagcttgttggatggacaccaccatcagctgccatcactgctgcagcagcaccacaatggacaccatctgcttgatcagcaccagcagcatcagcatcagcttcccccacaggcgacgacgacgagcgagagcgacggccgtgcccctcgcgacgagctggagatgagcaagtccggtggcagcgacaacctggagagcggcggtggcggtggcggaggtggctccggtggtgatcaggaccccaaccagcgcccccgcaagaagcgctaccaccgccacacccagcaccagatccaggagctcgaggccttcttcaaggagtgcccccaccctgatgacaagcagcgcaaggagctcagccgcgagctcggcctcgagcccctccaggtcaagttctggttccagaacaagcgcacccagatgaagacgcagcatgagagacacgagaacaatgcgctgcgcgcagagaacgagaagctgcgggcagagaacatgaggtacaaggaggcgcttgccaacgcgtcctgccccaactgcggcggtccggccgccatcggcgagatgtccttcgacgagcaccacctccgcctcgagaacgcgcgcctccgcgacgagattgacaggatctccgccatcgccgccaagtacgtcggcaagcccgccgcggccgtctcggccgcgtacccgccgctgccgccgtcgaacaggtcgccgctcgatcatatgggcattcccggcgctggcgccgacgtgttcggcgccgacttcgacaagccgctcgtcatcgagctcgccgtggccgccatggaggagctcgtcaggatggcgcagctcggcgagccgctctgggcgccggcgctcggcggcgaggcgctcggcgaggaggagtacgcgcgcacgttcccgcgcgggctagggcccaagtcgccggagctccggtcggaggcgtcgagggagacggcggtggtgatcatgaaccacgtcagcctcgtggagatgctcatggacgtcgggcagtggacggcgctcttctcgagcatcgtgtcgcgcgcggcgacgctggaggtgctctcgacgggcgtcgccggcaaccacaacggcgcgctgcagctcatgtccgccgagttccagatgccgtcgccgctggtgccgacgagggagacccagttcctgcgctactgcaagcagcaccccgacggcacgtgggccgtcgtcgacgtctccctcgacgggctccgcgccggcgccgggggcggatgccagccggcggcggcgcgcggccaccggcgccgcccctccggctgcctcatccaggagatgccgaacggctactccaaggtgacgtgggtggagcacgtggaggccgacgaccagatggtgcacaacctgtacaagccggtggtgaactccggcatggcgttcggcgctcgccggtgggtggcgacgctggagcggcagtgcgagcgcctggctagcgccatggcgagcaacgtggcgtcctcgggcgacgccggcgtgatcacgacgtcggaggggaggcggagcatgctgaagctggcggagcggatggtggcgagcttctgcggcggcgtgacggcgtcgacgacgcaccagtggacgacgctctccggcagcggcgccgaggacgtccgcgtcatgacgcgcaagagcgtcgacgaccccggccgccctcccggcatcatcctcaacgccgccacctccttctggctccccgtcccgccttcccgcgtcttcgacttcctccgcgacgactccacccgcagcgagtgggacatcctctccaatggcggcgtcgtccaagaaatggctcacatcgccaatggccgcgaccacggcaacgccgtctccctcctccgcgtcaacaacgcgaactcgaaccagagcaacatgctgatactgcaggagtgctgcacggacgcgacggggtcgtacgtgatatacgcgccggtggacgtggtggcgatgaacgtggtgctcaacggcggcgacccggactacgtggcgctgctgccgtcggggttcgccatcctccccgacgggccggacggcggcggcgggtcgctgctgacggtggcgttccagatactggtcgactccgtgcccaccgccaagctgtcgctcggctccgtcgccaccgtcaacagcctcatcgcctgcaccgtcgagcgcatcaaggccgccatcaccggcgacaacggcgtcgcgccgccatgcccacggtgacctcgccggcgtgcccatctatctgtccatcatgtgcaatggggatcaagggagggatcaagagcgaattcggaggtttagcaatgtggggagtcaagaacgcaccgcagactactgtccttgcaaaagtgtagttgctgcttcagttagctagttcatttatcattttttttaatcactatcaccaccaccaaaaaacccccagaaaaattaatcatgagtaaaaaccttaattatccaacacagcagcaacacaacttaggtcctgtgatcatggctgatatatatacactacatatatttatacagtgatatgtcataggctctgagttgtgttgctctcaacaaattcctactcatcatccaaaattaaatttgcttcagagttcagacaaacacattgcatccaatccatgcatatgccccctcttatttgatttcagttaggttagtttcagttaagttattaatgatctgtcacctgcattacatggctcatcaacagttcatcagagttaattagttcggaagcaagcaacactttgcaaggttggttggttggttcgggtattgactcctctttctctctccgggttgccactctctctctagaactcctcttctgatgcaagatttgttaatttcatcatcagctggactaatgcatgcatatgtgtactgcatagtagtacctttaaattcagtttgcaaaaagagtgtgtatcatgtttgtgcttaatttgctctccttgtctattagattgggcttaaactttgcatgcatttggagatttgcagaagtctgtcttgtatcctctctgtgattctcatggacagttcgattaattggactacctttttgcatcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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