2024-09-29 10:38:12, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422772 1628 bp mRNA linear PLN 22-JUN-2023 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX11-like (LOC4347205), mRNA. ACCESSION NM_001422772 XM_015755543 VERSION NM_001422772.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AP014965.1. On Jun 22, 2023 this sequence version replaced XM_015755543.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020315 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-487 AP014965.1 16675949-16676435 c 488-828 AP014965.1 16675524-16675864 c 829-908 AP014965.1 16675337-16675416 c 909-1628 AP014965.1 16674514-16675233 c FEATURES Location/Qualifiers source 1..1628 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="9" /map="9" gene 1..1628 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="homeobox-leucine zipper protein HOX11-like" /db_xref="GeneID:4347205" exon 1..487 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /inference="alignment:Splign:2.1.0" misc_feature 199..201 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="upstream in-frame stop codon" CDS 226..1314 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="putative homeodomain leucine zipper protein CPHB-3; homeodomain leucine zipper protein 11; HD-ZIP protein HOX11; Homeodomain transcription factor HOX11; LOC_Os09g27450" /codon_start=1 /product="homeobox-leucine zipper protein HOX11" /protein_id="NP_001409701.1" /db_xref="GeneID:4347205" /translation="
MELGLSLGEAMADAGRELVLGLGMGRREEAAEAGRRDHEVRRELEFGSMSSRCGGSSPEPTVRLTLLPMVPGLGLPWPPPPPPSSESRHLEASTRGFDVNRPPSSGGGGGGGGAEEEQDDVAGAALSSSPNNSAGSFPMDDFSGHGLGGNDAAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSAAAAAAPDHRPSSFAALFSSPRGFPLSVAPQAQPPTSS"
misc_feature 304..762 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="propagated from UniProtKB/Swiss-Prot (Q67UE2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(751..762,766..768,817..819,835..837,874..876, 880..885,892..897,901..909,913..918) /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 751..915 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" misc_feature order(754..756,763..765,883..885,892..897,904..906) /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 919..1053 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="propagated from UniProtKB/Swiss-Prot (Q67UE2.1); Region: Leucine-zipper" misc_feature 919..1050 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="homeobox associated leucin zipper; Region: HALZ; smart00340" /db_xref="CDD:128634" misc_feature 1126..1215 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /note="propagated from UniProtKB/Swiss-Prot (Q67UE2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 488..828 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /inference="alignment:Splign:2.1.0" exon 829..908 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /inference="alignment:Splign:2.1.0" exon 909..1628 /gene="LOC4347205" /gene_synonym="Hox11; OJ1596_C06.7; OsHox11; OsJ_028406" /inference="alignment:Splign:2.1.0" ORIGIN
tccgggtcacgtgcggcctcgtcaaccggtcaaaccccgccattatcacgcagccacatacgcgccggagggaagcgagcgagagaggtgtgaagtgtgaggtggtcaggtcgtcttcttccttcgctgctgctataaaacctcgcggcggcttgcgcgattacgaggttttccattgctgtgtgtgagtgaggtgagtgagtgagtgacggattgttgggagagatggagctggggttgagcttgggggaggctatggcggatgctgggagggagctggttcttgggcttgggatggggaggagggaggaggcggcggaggcggggaggagggatcatgaggtgaggagggagctggagttcgggtcgatgtcgagcaggtgcggtggttcttcgccggagccgacggtgcggctcacgcttctgcccatggtgcccggccttggcctcccatggccgccgccgccgccgccgtcgtccgagagcaggcatttggaggcgtcgacgcggggattcgacgtgaaccgcccgccgtcgtccggcggcggcggcggcggcggcggcgcggaggaggagcaggacgacgtggccggggcggcactctcgtcgtcccccaacaacagcgccggatccttcccgatggatgacttctccgggcacggcctcggcggcaacgacgcggcccctggcggtggcggcggcgaccgctcgtgctcccgcgccagcgacgaggacgacggcggctccgcgcgcaagaagctccgcctctccaaggagcagtccgcgttcctcgaggagagcttcaaggagcacagcaccctaaaccccaagcagaagctggcgctggcgaagcagctcaacctccggccgcgccaggtggaggtgtggttccagaaccgccgcgccaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtgctgcgagacgctgacggaggagaaccggcggctgcagaaggagctcgccgagctccgggcgctcaagacggtgcaccccttctacatgcacctcccggcgacgacactctccatgtgcccctcctgcgagcgcgtcgcctccaactccgccccggccaccgcctcctccgccgcaacatcgtcgacggccgcgccgcccgcggcaccctcatccggcggcattgcggccacctcctcctccgccgccgccgccgcggcgccggaccacaggccgtcgtcgttcgccgcgctgttctcgtcgccgcgtggcttcccgctatccgtagccccgcaggcgcagccgccgacgagctcgtgactcttccaactctccggcgacggcgaggggcctgtttgtaaattcgctcacttttcttttatcgtttttttttgttttgctcctttggttctttgggattttttgtggcttgccaagtggtttagcgagaatccgagggggcagcgcgtctggccgtccgattgggacacgtcgacggcgcacgatgcttaaagaaaaaaaatgttgcaatagagcttattaacctttataatttctgcgattttttgttttctatcaacaccatggtttaaattttacgggtctcttgcaaaccaagagaaaattatgcatta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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