2024-09-29 10:24:04, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422601 1914 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX20-like (LOC4345854), mRNA. ACCESSION NM_001422601 XM_015795365 VERSION NM_001422601.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1914) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK106818.1 and CI094584.1. On Jun 16, 2023 this sequence version replaced XM_015795365.2. ##Evidence-Data-START## Transcript exon combination :: AK106818.1, AK068244.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMN03003383 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1433 AK106818.1 2-1434 1434-1801 CI094584.1 1-368 1802-1864 CI094584.1 371-433 1865-1914 CI094584.1 441-490 FEATURES Location/Qualifiers source 1..1914 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="8" /map="8" gene 1..1914 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="homeobox-leucine zipper protein HOX20-like" /db_xref="GeneID:4345854" exon 1..533 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /inference="alignment:Splign:2.1.0" misc_feature 488..490 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="upstream in-frame stop codon" CDS 494..1303 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="OSJNBb0092C08.26; putative homeodomain leucine zipper protein; HD-ZIP protein HOX20; Homeodomain transcription factor HOX20; LOC_Os08g37580" /codon_start=1 /product="homeobox-leucine zipper protein HOX20" /protein_id="NP_001409530.1" /db_xref="GeneID:4345854" /translation="
MRSPAALLPVVADGGGGVGVEEEMDVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGSSESDSSAVLNDAEILPHKPAPAAAADAAASEETEAVVTGAALLHHAEVFFHGQLLKVDDDEAAFLGDDGAACGGFFADEHLPSLPWWAEPTEQWTT"
misc_feature 620..781 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 785..919 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="propagated from UniProtKB/Swiss-Prot (Q6Z248.1); Region: Leucine-zipper" misc_feature 785..910 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="Homeobox associated leucine zipper; Region: HALZ; pfam02183" /db_xref="CDD:460477" misc_feature 920..1033 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /note="propagated from UniProtKB/Swiss-Prot (Q6Z248.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 534..886 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /inference="alignment:Splign:2.1.0" exon 887..1914 /gene="LOC4345854" /gene_synonym="HOX20; OsHox20" /inference="alignment:Splign:2.1.0" ORIGIN
aaaacagagaggcaagaaaaagaaaacggaaaaccccccgcccagcccaaccacttcactcctcccactccagtactcgactccaccacactccagtccagtccagtacactccgcacacgcgtgccacagggatcatgcgaagcctcaagaacgtcgcctcctcctcctctagcggcgtctctcggttgtaggagacgctcgtcgtctttggacggatcggagcttgggggaggaaggcgacaaccatggtgccgatggtcctgggtcacaagacgggcggccacaccgacgacgccaagtgccatcaccggaggcacagcaccgagcaaccccacctctccccattacccttcccccggccacccctctcctcctgatcatcacgcctttctctgcttcttccatttgatctttgtgacaacgtcgtcctcctcccgctactcttcgaatcttttgtgaatttcacgtcgtgagacagtagggattgaagcatgagaagtccagcagcgcttctcccggtggttgcagatggtggtggtggtgttggggtggaggaggagatggatgtggacgaggacatggcgatgtgcggcggccgcggcggcggcggcggggagaagaagcggcggctgagcgtggagcaggtgcgcgcgctggagcggagcttcgagacggagaacaagctggagccggagcggaaggcgcggctggcgcgcgacctcgggctgcagccgcgccaggtcgccgtctggttccagaaccgccgcgcgcggtggaagaccaagcagctcgagcgcgactacgccgcgctccgccaatcctacgacgcgctccgcgccgaccacgacgcgcttcgccgcgacaaggacgccctcctcgccgagatcaaggagctgaaggggaagctcggcgacgaggacgccgcggcgagcttctcgtcggtgaaggaggaggaggacccggcggcgtccgacgccgaccccccggccaccggcgcgccgcagggctcgtccgagagcgactcgagcgcggtgctgaacgacgcggagatccttccacacaagccagcgccggcggccgccgccgacgccgcggcctcggaggagacggaggcggtggtgaccggcgccgcgctgctccaccacgccgaggtgttcttccacgggcagcttctcaaggtggacgacgacgaggcggcgttcctaggcgacgacggcgcggcgtgcggcggcttcttcgccgacgagcatctcccgtcgctgccgtggtgggccgagcccaccgagcaatggacgacctagctagccgcgaaaactttgcttacttggctggggcgaataaacaattccgtagggggttttctgcaaatttttgtaaaatgaaattgtacctagtccttttttgtcaaaatcctccccctctagtacgtgggccacgtggccggtgagctagaaatggcactcctggctttctctggctcaagcagcgaacgatgcagaaaggggagccaagggagattcgtgggaaacgcaggggaaattccgcaaaagtagcgggagagaaaaaagtgacagtagtgtactccgtagtgtggaggaaggcaacggcggcagcgctggagggaacagtgtcgctgtcggtgggcccggcgccacgtgaaaagcagacttgtcgctgacagcgattcctggcgtctgcctagtgtgtctacgcaaaaagccttgccacacttgccctcctttcctggccacaagagtgtagttcctctcacaagttcttttgtttgtgaatttttttttgcaaaaccatctaaaatatcaataaaaaaaatccgatttggcacaaacaaaatttttttttttgcagaatattggatggaaaaaacaaaggtgatgggtttgattttagttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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