2024-09-29 10:32:43, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422508 1262 bp mRNA linear PLN 19-FEB-2024 DEFINITION Oryza sativa Japonica Group WUSCHEL-related homeobox 10-like (LOC4345042), mRNA. ACCESSION NM_001422508 XM_015794156 VERSION NM_001422508.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1262) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK107305.1, AP014964.1 and CI112465.1. On Jun 15, 2023 this sequence version replaced XM_015794156.1. ##Evidence-Data-START## Transcript exon combination :: AK107305.1, CI112465.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00020318, SAMN05224561 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-368 AK107305.1 1-368 369-371 AP014964.1 8640390-8640392 c 372-820 AK107305.1 372-820 821-1262 CI112465.1 1-442 FEATURES Location/Qualifiers source 1..1262 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="8" /map="8" gene 1..1262 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /note="WUSCHEL-related homeobox 10-like" /db_xref="GeneID:4345042" exon 1..837 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /inference="alignment:Splign:2.1.0" misc_feature 147..149 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /note="upstream in-frame stop codon" CDS 180..1034 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /note="OSJNBa0087F21.36; putative homeodomain protein; LOC_Os08g14400; Protein WOX11/12" /codon_start=1 /product="WUSCHEL-related homeobox 10" /protein_id="NP_001409437.1" /db_xref="GeneID:4345042" /translation="
MDRTATASWEVMSRRGEQQQQLMMQAPASHNGGSGGGEPARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRRARQLQQACGAALHQLPSAAAAAGAGGGGDYYHHHHQPSSSPFLMHGGGGGGVVTSTTAAPAVAASGHFLADEVDGGGDDDLFAISRQMGLMARHGGGDHHYSSYADSDATQLSYQPTGTIQVFINGVAYDVPSGGALDMAGTFGRDAMLVHSSGEVLPVDEHGVLINSLQMGECYYLVSKSI"
misc_feature 180..308 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /note="propagated from UniProtKB/Swiss-Prot (Q6Z3L4.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 300..461 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" exon 838..1016 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /inference="alignment:Splign:2.1.0" exon 1017..1248 /gene="LOC4345042" /gene_synonym="OsJ_025487; OsWOX10; WOX10" /inference="alignment:Splign:2.1.0" ORIGIN
attaagcttgaattgctgctcccttgggcgcatgtgtgtcaccctctccttccattgatcctttcacatcctttaatttctctctttcttccacaacaaatcaaactgttcatcctccccttcacctttgacctttccaacctaattaattagctactacccaattagccgatccatccatggaccgcactgcgactgcaagctgggaggtcatgagccggcgaggtgagcagcagcagcagctgatgatgcaagctccggccagccataatggtggcagcggcggcggcgagccggcgaggtcgcggtgggcgccgaagccggagcagatcctgatactggagtccatcttcaacagcggcatggtgaacccggccaaggacgagacggcgcgcatccgccgcctcctcgagcgcttcggcgccgtccgcgacgccaacgtcttctactggttccagaaccgccgctcccgctcccgccgccgcgcccgccagctccagcaagcctgcggcgccgccctccatcagctcccctccgccgccgccgccgccggagccggaggaggaggagattactatcaccaccaccaccaaccttcgtcttctcctttcctcatgcacggcggtggcggcggcggcgtggtcacttcgacgaccgcggcgccagcggtggcggcgtccggccacttcttggcggacgaggtcgacggcggcggcgacgacgacctcttcgccatctcccggcagatgggcctcatggctcgccacggcggcggcgaccaccattacagcagctacgcggacagcgacgccacccagctcagctaccaaccaaccgggacgatccaagtgttcatcaatggcgtcgcatacgatgtgccgagcggcggagcgctggacatggccggcacgtttggccgcgacgccatgctggtgcactcctccggcgaggtccttccggtggacgagcacggcgtgctcatcaacagcttgcagatgggggagtgctactacctggtttcaaaatcgatctgattaatcggatggatgaaggtggagaagaagatgcaagatttatgtatgctcttgtaagcatgcgggatttgcttcattgattaattgggagattgattcccagctccatgaattgttgttaattaggttgtccagggatcatatcagtgtgtactaatgtggttgatttctctccatcgatgtatattattatctcgatgcatcgtccccttgaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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