2024-09-29 10:30:24, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422469 3308 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein ROC1-like (LOC4344832), mRNA. ACCESSION NM_001422469 XM_015794537 VERSION NM_001422469.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3308) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 3308) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK120496.1, CB663655.1, AP014964.1 and CI161652.1. On Jun 14, 2023 this sequence version replaced XM_015794537.2. ##Evidence-Data-START## Transcript exon combination :: AK120496.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMN02716058 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-67 AK120496.1 1-67 68-864 CB663655.1 1-797 865-1034 AK120496.1 865-1034 1035-1050 AP014964.1 5113254-5113269 1051-3271 AK120496.1 1037-3257 3272-3308 CI161652.1 564-600 FEATURES Location/Qualifiers source 1..3308 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="8" /map="8" gene 1..3308 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="homeobox-leucine zipper protein ROC1-like" /db_xref="GeneID:4344832" exon 1..199 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 200..508 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" misc_feature 386..388 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="upstream in-frame stop codon" CDS 422..2776 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="P0547A06.49; roc1(homeobox protein); P0020B10.22; GLABRA 2-like homeobox protein 1; HD-ZIP protein ROC1; Homeodomain transcription factor ROC1; LOC_Os08g08820; Protein RICE OUTERMOST CELL-SPECIFIC 1" /codon_start=1 /product="homeobox-leucine zipper protein ROC1" /protein_id="NP_001409398.1" /db_xref="GeneID:4344832" /translation="
MTPARRMPPVIGRNGVAYESPSAQLPLTQADMLDSHHLQQALQQQYFDQIPVTTTAAADSGDNMLHGRADAGGLVDEFESKSCSENVDGAGDGLSGDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENAQLRAENDKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRVENARLRDEIDRISGIAAKHVGKPPIVSFPVLSSPLAVAAARSPLDLAGAYGVVTPGLDMFGGAGDLLRGVHPLDADKPMIVELAVAAMDELVQMAQLDEPLWSSSSEPAAALLDEEEYARMFPRGLGPKQYGLKSEASRHGAVVIMTHSNLVEILMDVNQFATVFSSIVSRASTHEVLSTGVAGNYNGALQVMSMEFQVPSPLVPTRESYFVRYCKNNSDGTWAVVDVSLDSLRPSPVQKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCERLASAMASNIPNGDLGVITSVEGRKSMLKLAERMVASFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPAAVFDFLRDETSRSEWDILSNGGAVQEMAHIANGRDHGNSVSLLRVNSANSNQSNMLILQESCTDASGSYVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGPSGNAQAAVGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVCRDSNPQ"
misc_feature 662..766 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="propagated from UniProtKB/Swiss-Prot (Q6ZAR0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 740..910 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1301..1975 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; Region: START_ArGLABRA2_like; cd08875" /db_xref="CDD:176884" misc_feature order(1385..1390,1421..1423,1484..1486,1490..1492, 1523..1525,1535..1537,1547..1549,1556..1561,1574..1579, 1658..1660,1664..1675,1682..1684,1691..1693,1697..1699, 1703..1705,1751..1753,1793..1795,1799..1810,1814..1816, 1850..1852,1856..1858,1862..1864,1868..1870,1874..1876, 1880..1882,1898..1900,1904..1912,1916..1924,1931..1936, 1943..1945) /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176884" exon 509..789 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 790..907 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 908..1546 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 1547..1648 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 1649..1849 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 1850..2024 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 2025..2296 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 2297..2392 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 2393..2820 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" exon 2821..3297 /gene="LOC4344832" /gene_synonym="GL2-1; ROC1" /inference="alignment:Splign:2.1.0" ORIGIN
gccccccctctcgcaataactcctcctccccatctccacattcctcccccaaatcccctcttcttcttcttcttcttcttcctcctcctcccatggcgatcggcgtctgcttctagctggagagatctcgcttcgtttcgagctgtccaccggtggttttctcgcatgcgatatcacacgcttcttggaagcacatcagagttcttggtgctgaccttgccctagatctgcttctgactgttgctgttacgtggcgtgcaagctagctatagccatttctgtgtgtgtagctgtactggtggtgaagaagaagatgcaagcgaatgggtggaggagctagaggcttggctggaggaagaagaagaaggggttggtggtggctagctagctagggtgcgtgcttaattacctggcttcgttcatgacgccggcgaggcgcatgccgccggtgatcggccggaacggcgtggcgtacgaatcgccgtcggcgcagctgcccctcacccaggctgatatgctggacagccatcatctgcagcaagcactccagcagcaatacttcgatcagatcccggtgacgacgacggcggcggcggacagcggcgacaacatgctgcacggccgcgccgacgccggcgggctggttgacgagttcgagagcaagtcgtgcagcgagaacgtcgacggcgccggcgacggcctctccggcgacgaccaggaccccaaccagcggccgcgcaagaagcgttaccaccgccatacccagcaccagatccaagagatggaagctttcttcaaggagtgcccgcacccagacgacaagcagcgcaaggagctgagcagggagctgggtcttgaacctctgcaggttaaattctggtttcagaacaagcgcacacagatgaagaaccagcacgagaggcacgagaacgcgcagctgcgggcggagaacgacaagctgcgcgcggagaacatgcgatacaaggaggccctgagcagcgcgtcgtgccccaactgcggcggccccgccgccctcggcgagatgtccttcgacgagcaccacctccgcgtcgagaacgcccgcctccgcgacgagatcgaccgcatctccggcatcgccgccaagcacgtcggcaagccccccatcgtctccttccccgtcctctcctccccgctcgccgtcgccgccgcccgctcccctctcgacctcgccggcgcctacggcgtcgtcacccccggcctcgacatgttcggcggcgccggcgacctcctccgcggcgtgcacccgctcgacgccgacaagcccatgatcgtggagctcgccgtcgccgccatggacgagctcgtccagatggcccagctcgacgagccgctctggtcgtcgtcgtcggagccggcggcggcgttgctcgatgaggaggagtacgcgcgcatgttcccgcgcggcctcggccccaagcagtacggcctcaagtcggaggcgtcccgccatggcgccgtcgtcatcatgacgcacagcaacctcgtcgagatcctcatggatgtgaatcaattcgcgacggtgttctcgagcatcgtgtcgagagcgtccacgcacgaggtgttgtccacaggcgtggcaggcaactacaatggtgcactgcaagtgatgtcaatggagtttcaagtgccgtcgccgctggtgccgacgagggagagctatttcgtcaggtactgcaagaacaactccgacgggacatgggccgtcgtcgatgtctctctcgacagcctccgccccagccctgtccagaaatgccggcgcaggccgtctggctgcctcatccaagaaatgcccaatggctactccaaggtgacatgggtggagcatgtggaggtggacgacagctcggtgcacaacatctacaagccattggtgaactccggcctcgcattcggcgcgaaacggtgggtcggcacgctggaccggcaatgcgagcgcctcgccagcgccatggccagcaacatccccaatggcgaccttggagtgattacaagcgtggaggggaggaagagcatgttgaagctggcggagaggatggtggcgagcttctgcggcggcgtgacggcgtcggtggcgcaccagtggacgacgctgtcgggcagcggggcggaggacgtgcgcgtcatgacgaggaagagcgtcgacgaccccggcaggccaccgggcatcgtgctcaacgccgccacctccttctggctccccgtccctcccgccgccgtcttcgacttcctccgcgacgagacctctcgcagcgagtgggacattctgtccaacggcggcgccgtccaagaaatggctcacattgccaacggccgtgaccatggcaactctgtctcgcttcttcgtgtcaatagtgcaaattcaaaccagagcaacatgctgatcctgcaagagagctgcacggacgcgtcgggctcctacgtggtgtacgcgccggtggacatcgtggcgatgaacgtggtgctcaacggcggcgacccggactacgtggcgctgctgccgtcggggttcgccatccttcccgacgggccgtcggggaacgcgcaggccgccgtcggggagaacggctccggctccggcggggggtccctcctgacggtggcgttccagatcctcgtcgactccgtgccgacggcgaagctctcgctgggctccgtcgcgacggtgaacagcctcatcgcctgcacggtggagcgcatcaaggccgccgtctgcagggacagcaaccctcagtagtagcaccggcttcaaccaaatatgatcacgaacaatgttccaaggagcagcaaaattttggagtttgattcagcagtagggagtcaagaacgcacctcaaactctccttgccatgtggtgcccttgctagtgaagaatttgcgaggaaaccgacgcgtttgcgagaaaattttcgcgaagatacatagtgtcaccactatgcaaggggggatggttcgggcattgacttccaccttttgattttcatcaaatgcatcgaagagtggatgctgctaccttgttgtttttctgaatctctatgttagggcttcttttaccatgtttaaaaagggctatgaagcctcatttttatctgtactgttgtgatgtgttgtctgtttgttcagacttcaggttcctgtcccttagctaggagttgagaatagagagattcatgtccccccttttggattttatcacatttccgatgatttgtagacttgtggttgttgcttgttggtcattaccattcttgtctcaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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