2024-09-29 10:26:19, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422370 886 bp mRNA linear PLN 19-FEB-2024 DEFINITION Oryza sativa Japonica Group serotonin N-acetyltransferase 2, chloroplastic-like (LOC4344423), mRNA; nuclear gene for chloroplast product. ACCESSION NM_001422370 XM_015793212 VERSION NM_001422370.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 886) AUTHORS Hwang,O.J. and Back,K. TITLE Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and Accelerated Seed Deterioration in Rice JOURNAL Biomolecules 10 (1), 141 (2020) PUBMED 31952365 REMARK GeneRIF: Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and Accelerated Seed Deterioration in Rice. Publication Status: Online-Only REFERENCE 2 (bases 1 to 886) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI298090.1 and AK068156.1. On Jun 9, 2023 this sequence version replaced XM_015793212.2. ##Evidence-Data-START## Transcript is intronless :: AK068156.1, CF326118.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-360 CI298090.1 1-360 361-886 AK068156.1 359-884 FEATURES Location/Qualifiers source 1..886 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="8" /map="8" gene 1..886 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /note="serotonin N-acetyltransferase 2, chloroplastic-like" /db_xref="GeneID:4344423" exon 1..886 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /inference="alignment:Splign:2.1.0" misc_feature 22..24 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /note="upstream in-frame stop codon" CDS 31..633 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /EC_number="2.3.1.87" /note="Os08g0102000; B1147B12.22; putative ORF174; LOC_Os08g01170" /codon_start=1 /product="serotonin N-acetyltransferase 2, chloroplastic" /protein_id="NP_001409299.1" /db_xref="GeneID:4344423" /translation="
MQMQAARPRVGVRPRGGIRPFPLPTLSFNNNSNRSACACACAVSVSDSELAARGFAVRRSSTGLDVGALNEVFARVGFPRRQEERLRRALEHSEVVWLEDSASSSAGRPVAFARAAGDGVFNAVVWDVVVEPSCQGLGLGRAVMERLVADLRGKGVSNIALYAEPRVVGFYRLLGFAMDPDAIRGMAFYRSRQQIQNTSS"
transit_peptide 31..153 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /note="Chloroplast. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q6Z1Y6.1)" mat_peptide 154..630 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /product="Serotonin N-acetyltransferase 2, chloroplastic. /id=PRO_0000437953" /note="propagated from UniProtKB/Swiss-Prot (Q6Z1Y6.1)" misc_feature 223..600 /gene="LOC4344423" /gene_synonym="OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /note="Predicted N-acetyltransferase YhbS [General function prediction only]; Region: yhbS; COG3153" /db_xref="CDD:442387" ORIGIN
attgtcatgcagatgcagaggtagaggcagatgcagatgcaggcggcgcggccccgcgttggtgtccgtcctcgcggtggcattcggccgtttccactgcccaccttgagcttcaacaacaactccaacaggagtgcgtgtgcgtgtgcgtgtgcggtgtcggtgtcggactctgagcttgcggcgcgcgggttcgcggtgcggcgcagctcgacggggctggacgtgggggcgctgaacgaggtgttcgcgcgggtggggttcccgcggcggcaggaggagcggctgcggcgagcgctggagcacagcgaggtggtgtggctggaggactcggcgtcgtcgtcggcggggcggccggtggcgttcgcgcgcgcggcgggggacggcgtgttcaacgcggtggtctgggacgtggtggtggagccgtcgtgccagggcctcggcctcggccgcgccgtcatggagcgcctcgtcgccgacctgcgaggcaagggcgtctccaacatcgcgctctacgccgagccccgcgtcgtgggattctaccgcctcctcggcttcgccatggaccccgacgccatcaggggcatggccttctaccgctcaaggcaacaaatacaaaacacctcctcctagctccttttctatcttcttcttctccgatcaatatatccaaaacacatattggattgcatattaatttgcatgtgtatgtatgtatattcaagctgattattattgtctagacacacacacacacatgcagagtgaaatcaactcatcaaatacatatgtagttgcagctgattgcaaccagtaatccattccattcatcacacttgctaattacacttcattcttgttttacctctctctctctctctctctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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