LOCUS       NM_001422295            1415 bp    mRNA    linear   PLN 01-MAY-2025
DEFINITION  Oryza sativa Japonica Group WUSCHEL-related homeobox 11-like
            (LOC4344325), mRNA.
ACCESSION   NM_001422295 XM_015790233
VERSION     NM_001422295.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1415)
  AUTHORS   Li,Y., Wang,J., Gao,Y., Pandey,B.K., Peralta Ogorek,L.L., Zhao,Y.,
            Quan,R., Zhao,Z., Jiang,L., Huang,R. and Qin,H.
  TITLE     The OsEIL1-OsWOX11 transcription factor module controls rice crown
            root development in response to soil compaction
  JOURNAL   Plant Cell 36 (6), 2393-2409 (2024)
   PUBMED   38489602
  REMARK    GeneRIF: The OsEIL1-OsWOX11 transcription factor module controls
            rice crown root development in response to soil compaction.
REFERENCE   2  (bases 1 to 1415)
  AUTHORS   Cheng,S., Tan,F., Lu,Y., Liu,X., Li,T., Yuan,W., Zhao,Y. and
            Zhou,D.X.
  TITLE     WOX11 recruits a histone H3K27me3 demethylase to promote gene
            expression during shoot development in rice
  JOURNAL   Nucleic Acids Res 46 (5), 2356-2369 (2018)
   PUBMED   29361035
  REMARK    GeneRIF: WOX11 interacts with the H3K27me3 demethylase JMJ705 to
            activate gene expression during shoot development in rice.
REFERENCE   3  (bases 1 to 1415)
  AUTHORS   Zhao,Y., Cheng,S., Song,Y., Huang,Y., Zhou,S., Liu,X. and Zhou,D.X.
  TITLE     The Interaction between Rice ERF3 and WOX11 Promotes Crown Root
            Development by Regulating Gene Expression Involved in Cytokinin
            Signaling
  JOURNAL   Plant Cell 27 (9), 2469-2483 (2015)
   PUBMED   26307379
  REMARK    GeneRIF: The interaction between rice ERF3 and WOX11 promotes crown
            root development by regulating gene expression involved in
            cytokinin signaling.
REFERENCE   4  (bases 1 to 1415)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK063503.1, CI437951.1 and CI442011.1.
            
            On Jun 6, 2023 this sequence version replaced XM_015790233.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK063503.1, AK073232.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00497392, SAMD00497393
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1282              AK063503.1         1-1282
            1283-1400           CI437951.1         299-416
            1401-1415           CI442011.1         405-419
FEATURES             Location/Qualifiers
     source          1..1415
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
                     /map="7"
     gene            1..1415
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /note="WUSCHEL-related homeobox 11-like"
                     /db_xref="GeneID:4344325"
     exon            1..708
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    102..104
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /note="upstream in-frame stop codon"
     CDS             114..902
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /note="LOC_Os07g48560"
                     /codon_start=1
                     /product="WUSCHEL-related homeobox 11"
                     /protein_id="NP_001409224.1"
                     /db_xref="GeneID:4344325"
                     /translation="

MDGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAPGHAGSPASSLGMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMDGGGGSSSSAAAGQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLVTRSS"

     misc_feature    114..176
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0D3I7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    171..332
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    348..458
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0D3I7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            709..884
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1415
                     /gene="LOC4344325"
                     /gene_synonym="OsJ_25623; OsWOX11; WOX11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aagccaattaagcgaattaagcacacatcaattgaccaaacctatctctctatctctctcgagctagcgagctctaggtgttcgacaccgaacaaggcagctagctagtggcgatggacggcggccacagcccggacaggcatgcggcggcggcggcgggggagccggtgaggtcgcggtggacgccgaagccggagcagatactcatcctggagtccatcttcaacagcggcatggtgaacccgcccaaggacgagaccgtccgcatccgcaagctgctcgagcgcttcggcgccgtcggcgacgccaacgtcttctactggttccagaaccgccgctcgcgctcccgccgccgccagcgccagctgcaggcgcaggcgcaggcggccgcggccgccgcctcgtcgggatctcctccgactgcttcgtccggtggcctcgcgcctggccacgccggctcgccggcttcgtcgctcgggatgttcgcgcacggcgccgccgggtacagctcctcgtcgtcctcatcgtggccgtcctcgccgccgtcggtggggatgatgatgggggacgtggactacgggggcggcggcgacgacctgttcgccatctcgaggcagatggggtacatggacggcggcggcggctcgtcgtcgtcggcggccgccggtcagcatcagcagcagcagctctactactcgtgtcaacctgcgacgatgacggtgttcatcaacggagtggcgacggaggtgccaaggggaccgatcgatctgagatcaatgtttgggcaggacgtgatgctggtgcattcaacgggtgctcttcttccagccaacgagtacggcatcctcctccattctctccagatgggcgagagctacttcctggtcacgaggtcgtcttgatcgagttgagcgattcgtcgattgattgatcgatggcaacgtacgtattgtgtcagcaagatttaggtaccccttgtccgttggatcagatcgatatgcaagcaacgcatgctttgcaggtgccggccggttaattacgcgatcgatcgagctagcagatgatgaatgctgcacgtacgcatggcaattgtcactgcgacgagcctgcatatatatgaacgatccattgatcgtcattctagcgaccaagcagcacgatagtacaagtatatactatacaatgcaattgcagcgacgaactagttaattataatacagataatgcatgtgtacttctgtggccatacatatatatatagagagagaggggattaattactatattcgtttttcatctagctggtcgatctctgtgtgtacttgtatgtatcccgttctcgatctttatatcagaatattttatatatgtatattttacaattatatatatagccgtctcgatcgccaagcaaa

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