2024-09-29 10:26:19, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422259 1413 bp mRNA linear PLN 19-FEB-2024 DEFINITION Oryza sativa Japonica Group UDP-arabinopyranose mutase 3-like (LOC4343849), mRNA. ACCESSION NM_001422259 XM_015792494 VERSION NM_001422259.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1413) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK061294.1 and CI132182.1. On Jun 5, 2023 this sequence version replaced XM_015792494.1. ##Evidence-Data-START## Transcript exon combination :: AK061294.1, CF307099.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1320 AK061294.1 1-1320 1321-1413 CI132182.1 408-500 FEATURES Location/Qualifiers source 1..1413 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="7" /map="7" gene 1..1413 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /note="UDP-arabinopyranose mutase 3-like" /db_xref="GeneID:4343849" exon 1..386 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /inference="alignment:Splign:2.1.0" CDS 51..1151 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /EC_number="5.4.99.30" /note="OSJNBb0040H10.21; putative reversibly glycosylated polypeptide; LOC_Os07g41360; Reversibly glycosylated polypeptide 3; UDP-L-arabinose mutase 3" /codon_start=1 /product="uDP-arabinopyranose mutase 3" /protein_id="NP_001409188.1" /db_xref="GeneID:4343849" /translation="
MASSDAAAAQAATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPKKTIRVPEGFDYELYNRDDINRILGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLNPSTPFFFNTLYDPYRDGADFVRGYPFSLREGAPTAVSHGLWLNIPDYDAPTQLVKPLERNSRYVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVITDHLGLGVKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQSASLPKEADTVQKCYLELAKQVRAKLGKVDGYFNKLADSMVTWIEAWDQLNPPKGAVATANGTAKSK"
misc_feature 87..1109 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /note="reversibly glycosylated polypeptide; Provisional; Region: PLN03180" /db_xref="CDD:215615" misc_feature 372..380 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /note="propagated from UniProtKB/Swiss-Prot (Q6Z4G3.1); Region: DXD motif. /evidence=ECO:0000250|UniProtKB:Q8H8T0" misc_feature 516..518 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /note="N-linked (Glc...) arginine. /evidence=ECO:0000250|UniProtKB:Q8H8T0; propagated from UniProtKB/Swiss-Prot (Q6Z4G3.1); glycosylation site" misc_feature 516..518 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /note="Required for activity. /evidence=ECO:0000269|PubMed:20149347; propagated from UniProtKB/Swiss-Prot (Q6Z4G3.1); other site" misc_feature 537..539 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /note="Required for activity. /evidence=ECO:0000269|PubMed:20149347; propagated from UniProtKB/Swiss-Prot (Q6Z4G3.1); other site" exon 387..637 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /inference="alignment:Splign:2.1.0" exon 638..806 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /inference="alignment:Splign:2.1.0" exon 807..1413 /gene="LOC4343849" /gene_synonym="OsJ_25044; OsUAM3; RGP3; UAM3" /inference="alignment:Splign:2.1.0" ORIGIN
cccgacctccacctccacctccacctctacctcctcctccgccaccggcaatggcttcctccgacgccgcggccgcgcaggcggcgacgccgctgctgaaggacgagctggacatcgtgatcccgacgatccgcaacctggacttcctggagatgtggaggcccttcttccagccgtaccacctcatcatcgtccaggacggcgaccccaagaagacgatccgggtgcccgagggcttcgactacgagctctacaaccgcgacgacatcaaccggatcctcggccccagggcctcctgcatctccttcaaggactccgcctgccgctgcttcggctacatggtctccaagaagaagtacatctacaccatcgacgacgactgcttcgttgctaaagacccatcaggaaaggatatcaatgcacttgagcagcacatcaagaaccttctgaacccttccactccatttttcttcaacactttgtatgacccgtaccgtgatggcgctgattttgtccgtgggtaccccttcagcctccgtgagggtgccccgactgccgtttctcatgggctttggctcaacattccagactatgatgcccctacccagcttgtcaagcctcttgagaggaacagcaggtatgtggatgctgttatgacaatcccgaagggcactttattcccgatgtgtggaatgaaccttgcttttgaccgtgacctcatcggtcctgcgatgtactttggtcttatgggtgatggccagcctattggtcgttacgacgatatgtgggcaggatggtgcaccaaggtgattaccgatcacttgggtttgggtgttaagactggccttccctacatctggcacagcaaagcgagcaacccctttgtgaacctcaagaaggaatacaacggcatattctggcaggaggagctgatccccttcttccagtctgcgtccctcccgaaggaggccgacactgtccagaagtgttaccttgagctggccaagcaagtgagggcgaagctcgggaaggtcgatggctacttcaacaagctcgccgactccatggtcacatggattgaggcctgggatcagctgaacccaccaaagggagctgttgccaccgcaaacggcactgccaagagcaagtgagagggcggtagtataaaaacttcgtttgttcatgtgaactgcttatactgaaataccgaaatacttttggttttgttagtgctgattgaactgagatcgcttcagcgttgtaacttcaaatgtgtcacctccctggacaaccgtcctggctgttctatggtatttacaattttttttttctttttggtgtgatgaaacagttgtaatgtcaggatcgaatcaccttcaaattagaataaagatattggttatgtttacatat
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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