2024-09-29 10:26:43, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001422028 1329 bp mRNA linear PLN 10-APR-2024 DEFINITION Oryza sativa Japonica Group thioredoxin H2-1-like (LOC4342618), mRNA. ACCESSION NM_001422028 XM_015791492 VERSION NM_001422028.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1329) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CB681256.1 and AK241734.1. On May 31, 2023 this sequence version replaced XM_015791492.2. ##Evidence-Data-START## Transcript exon combination :: AK241734.1, CI656976.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-686 CB681256.1 21-706 687-1329 AK241734.1 79-721 FEATURES Location/Qualifiers source 1..1329 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="7" /map="7" gene 1..1329 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="thioredoxin H2-1-like" /db_xref="GeneID:4342618" exon 1..785 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /inference="alignment:Splign:2.1.0" misc_feature 558..560 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="upstream in-frame stop codon" CDS 651..1067 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="OSJNBb0003E08.27; putative thioredoxin; LOC_Os07g09310" /codon_start=1 /product="thioredoxin H2-1" /protein_id="NP_001408957.1" /db_xref="GeneID:4342618" /translation="
MGGAFSTSKPKPAAGEEGGESAVVAVHSKAKWDELWDAHKNTTKLVVIDFSASWCGPCKMMEPVFKEMAGRFTDVAFLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKDELEKTINTLRSSSSSTATTT"
misc_feature 651..710 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="propagated from UniProtKB/Swiss-Prot (Q6Z4I3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 756..1025 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:239245" misc_feature 795..797 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="Deprotonates C-terminal active site Cys. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q6Z4I3.1); other site" misc_feature order(813..815,822..824) /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="catalytic residues [active]" /db_xref="CDD:239245" misc_feature 816..818 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="Contributes to redox potential value. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q6Z4I3.1); other site" misc_feature 819..821 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /note="Contributes to redox potential value. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q6Z4I3.1); other site" exon 786..908 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /inference="alignment:Splign:2.1.0" exon 909..1329 /gene="LOC4342618" /gene_synonym="OsJ_23401; OsTrx24; OsTrxh2-1" /inference="alignment:Splign:2.1.0" ORIGIN
gttccagatgaacatatgagttttacgggattctgatgctttctgttacttttgatgtgcatatggtcaatgggtcatctcgctccttaaaccaaacggccccccaatgaatcagataccttcatccacctactagcagtactcatcaaggtgttctagataatgcactcttaattaataaaaatggcactataataaaccacagctcacagtacagcagccttcagttttccttttctagtggagcagttgagtttagcctgcggttttttgagacgagcagagtagttcagttgttagtattgtcctctttcttatgctacaagtgaacttatgctttagttcctctatcccaaaataaattaatctcatattagatatgacatatttcagtacgatgatcacaaactaagctcgtactgtcacatctaagatacgaggtggtacgatgttggtttatttgggacaggtgggaggttggtaagtgagaatattaaatattgtaatattttgtaaagagaacttatgctctaagtaagaatattaaatgtgagtcatgagtcaacggggtcaagcccctacaaaagccaagaaccccaagcccttccagctgcagacttgcagtgcctcgatcagctcactgtaacaagatgggcggcgccttctcgacgtcgaagccgaagcccgccgccggcgaggagggcggcgagtccgccgtggtggccgtccactccaaggccaagtgggacgagctgtgggacgcccacaagaacaccacaaagctggtggtgatagacttctcggcgtcgtggtgtgggccgtgcaagatgatggagccggtgttcaaggagatggccggccgcttcaccgacgtcgccttcctcaaggtcgacgtcgacgagctcgcggaggtggcgcggacctggcgggtggaggcgatgccgacgttcgtgctggcgaggggcggcgaggaggtcggccgcatcgtcggcgccgacaaggacgagctcgagaagaccatcaacacgctcaggtcatcgtcgtcgtcgacggcgacgacgacgtgattggttgggagatgcataaataaacatgttgtcatgttcatcagtcatcaccacctagctctgctgctggttaatttaagtactaccactaccttagttaattagctctcccggtttgcctaataaatattccgcattgtaatatagccaacttaattagttcgtatgttcgcgtgtgttgtgatcgtctgctagttatgtacagtcttgaagcctgagtgctggagctaataaagatttgcataacttggattggattttc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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