LOCUS       NM_001421692            1272 bp    mRNA    linear   PLN 19-FEB-2024
DEFINITION  Oryza sativa Japonica Group MADS-box transcription factor 30-like
            (LOC4341786), transcript variant 1, mRNA.
ACCESSION   NM_001421692
VERSION     NM_001421692.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Schilling,S., Gramzow,L., Lobbes,D., Kirbis,A., Weilandt,L.,
            Hoffmeier,A., Junker,A., Weigelt-Fischer,K., Klukas,C., Wu,F.,
            Meng,Z., Altmann,T. and Theissen,G.
  TITLE     Non-canonical structure, function and phylogeny of the Bsister
            MADS-box gene OsMADS30 of rice (Oryza sativa)
  JOURNAL   Plant J 84 (6), 1059-1072 (2015)
   PUBMED   26473514
  REMARK    GeneRIF: It was concluded that sequence deviations that accumulated
            led to MADS30 and the alteration of the C-terminal domain might
            have been a precondition for a potential neo-functionalization of
            OsMADS30 in O. sativa.
REFERENCE   2  (bases 1 to 1272)
  AUTHORS   Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S.,
            Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.
  TITLE     Systematic reverse genetic screening of T-DNA tagged genes in rice
            for functional genomic analyses: MADS-box genes as a test case
  JOURNAL   Plant Cell Physiol 44 (12), 1403-1411 (2003)
   PUBMED   14701936
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014962.1, CF322128.1, AY174093.1, CI138112.1 and CI259303.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY174093.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN07124405 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               AP014962.1         27637542-27637715
            175-226             CF322128.1         182-233
            227-229             AP014962.1         27637854-27637856
            230-810             AY174093.1         10-590
            811-1205            CI138112.1         291-685
            1206-1272           CI259303.1         635-701
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..1272
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="MADS-box transcription factor 30-like"
                     /db_xref="GeneID:4341786"
     exon            1..201
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    170..172
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="upstream in-frame stop codon"
     exon            202..408
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..886
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="P0637D03.37; Os06g0667266; LOC_Os06g45650"
                     /codon_start=1
                     /product="MADS-box transcription factor 30"
                     /protein_id="NP_001408621.1"
                     /db_xref="GeneID:4341786"
                     /translation="

MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMVTKILLLNVITIMILAAMISITHARIALDDCMQLGYIVIKQENSWRFWFI"

     misc_feature    224..436
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="MEF2 (myocyte enhancer factor 2)-like/Type II
                     subfamily of MADS (MCM1, Agamous, Deficiens, and SRF
                     (serum response factor) box family of eukaryotic
                     transcriptional regulators. Binds DNA and exists as hetero
                     and homo-dimers. Differs from SRF-like/Type I...; Region:
                     MADS_MEF2_like; cd00265"
                     /db_xref="CDD:238165"
     misc_feature    order(224..232,236..238,242..244,257..259,263..265,
                     275..280,287..292,296..301,308..313,317..322,332..334)
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238165"
     misc_feature    order(281..283,302..307,314..319,323..328,335..337,
                     350..352,356..358,362..364,380..382,386..388,404..406,
                     419..424,431..433)
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238165"
     misc_feature    395..397
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="putative phosphorylation site [posttranslational
                     modification]; other site"
                     /db_xref="CDD:238165"
     misc_feature    473..736
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /note="K-box region; Region: K-box; pfam01486"
                     /db_xref="CDD:460228"
     exon            409..484
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            485..649
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            650..691
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            692..754
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            755..845
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
     exon            846..1272
                     /gene="LOC4341786"
                     /gene_synonym="MADS30; OsMADS30"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gctcctctccttcagctcgaaggaagccgttccagtgtctcacaagccaaggtaaagaaaaaaaagagagagaaaaaaacagagaaggaaatcaagagaagaacaccatttgattctcctctctgctcactccttctccttcttctgtttgtccgtcttggattggagctagcacttctttgactgcccttgttcatcgaggcggcgaggcgaggtcgcgatggggcaagggaagatcgagatgaagaggatcgaggacgcgacgaggcggcaggtgacgttcagcaagcgcagggctgggtttctcaagaaggcgaacgagctcgccgtgctgtgcgatgcgcaggtcggcgtcgtcgtcttctccgacaagggcaagctcttcgacttctgcagcccgccggtcatcttgatggagctgtttcaccgttatgagatcaccaccagaaacactcggcttcaggagacaaaccgtgatgatgagcaaatggtcatggagatcacaaggctaaggaatgagatcgaccagctcgaagccagtttaaggaggcaaactggagaagacctgtcatctgtgtccacagtggatgagctcagccagctgcagctgcagcttgaatcatctctcagcaaagttcatgcgaggaaggatgagctcatgagccagcagctggaggatatgcgtcgcatgcatcagaccgtgcatgagcagaacaatttcttgtgccgcatggtaactaaaatactcctactaaatgtgatcacaataatgatacttgctgccatgatttctatcactcatgcacgcattgcccttgatgattgtatgcagttgggatatattgtcatcaagcaagaaaattcttggcgattctggtttatatgacttcctggaagcagtaggaacaacaagagttactgaaccagaaattgaacttgccttcttcatgcatcagatgaaccataaagggaacaacactactaccctctccaaaattgagctgctcaggacttcgtagaaatttacagcttcaggacatgtgatttatccattctcttttactgtttattctaaaatgcaaaaaaaaaagaaattttgttgtagcttagattaaggcagcctcagctttgtggtttgccaagccatgtactgatatatgaatgtgatactttaattaatgttgaaacgcatgattatgtatttgaactgaattgactgaatgtgtcctggaatcggtttagaacttaatatatcaatcagacttttgttct

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