LOCUS       NM_001421528            2025 bp    mRNA    linear   PLN 20-FEB-2024
DEFINITION  Oryza sativa Japonica Group endoglucanase 17-like (LOC4340679),
            mRNA.
ACCESSION   NM_001421528 XM_015786458
VERSION     NM_001421528.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK060686.1, AP014962.1 and CI129958.1.
            
            On May 19, 2023 this sequence version replaced XM_015786458.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK060686.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020320
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1049              AK060686.1         1-1049
            1050-1052           AP014962.1         8180185-8180187     c
            1053-1766           AK060686.1         1053-1766
            1767-2025           CI129958.1         192-450
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..2025
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /note="endoglucanase 17-like"
                     /db_xref="GeneID:4340679"
     exon            1..254
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    39..41
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /note="upstream in-frame stop codon"
     CDS             60..1553
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /EC_number="3.2.1.4"
                     /note="P0624H09.19; putative endo-1,4-beta-glucanase;
                     Endo-1,4-beta glucanase 17; LOC_Os06g14540; endoglucanase
                     17"
                     /codon_start=1
                     /product="endoglucanase 17 precursor"
                     /protein_id="NP_001408457.1"
                     /db_xref="GeneID:4340679"
                     /translation="

MAAAGGAVLLLVLATATSVTGQHDYSDALHKSILFFEGQRSGRLPPDQRLRWRRDSALNDGATAGVDLTGGYYDAGDNVKFGFPMAFTATLMSWGLIDFGRSFGAHAAEAREAVRWATDYLMKATATPNTVYVQVGDAFRDHSCWERPEDMDTPRTVYKVDPSHPGSDVAAETAAALAAASIVFRDADPDYSNRLLDRAIQVFEFADKYRGPYSSSLHAAVCPCYCDYSGYKDELLWGAAWLHKASRRREYRDYIKRNEVVLGASEAINEFGWDNKHAGINVLISKEVLMGKDEYFQSFRVNADNFICTLLPGISNHPQIQYSPGGLLFKVGNSNMQHVTSLSFLLLAYSNYLSHANVRVPCGTSSASPVQLRRVAKRQVDYILGDNPLRMSYMVGYGSRYPLRIHHRGSSLPSVAAHPAQIGCKAGATYYASAAPNPNLLVGAVVGGPSNTSDAFPDARAVFQQSEPTTYINAPLLGLLAYFSAHPNLAQSDLLYD"

     misc_feature    60..1529
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /note="endoglucanase; Region: PLN02308"
                     /db_xref="CDD:177943"
     sig_peptide     60..122
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="COORDINATES: ab initio prediction:SignalP:6.0"
     mat_peptide     123..1550
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /product="Endoglucanase 17. /id=PRO_0000249294"
                     /note="propagated from UniProtKB/Swiss-Prot (Q652F9.1)"
     misc_feature    1410..1412
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q652F9.1); glycosylation site"
     exon            255..662
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
     exon            663..755
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
     exon            756..917
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
     exon            918..1032
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1196
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
     exon            1197..2014
                     /gene="LOC4340679"
                     /gene_synonym="GLU13; OsGLU13; OsJ_020012"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aactaaaccaccaccaccaccaccccccgccgagacagtgacactctccttccgcggcaatggcggcggcgggcggtgctgtgctgctgctggtgctggcgaccgcgacttcggtgacagggcagcatgactacagcgacgcgctccacaagagcatcctgttcttcgagggccagcgctccggccgcctgccacccgaccagcgcctccgctggcgccgtgactccgccctcaacgacggcgccaccgccggcgtggacctgacgggagggtactacgacgccggcgacaacgtgaagttcgggttcccgatggcgttcacggcgacgctcatgtcgtgggggctgatcgacttcgggcggagcttcggggcgcacgcggcggaggcgagggaggcggtgcggtgggcgacggactacctgatgaaggcgacggcgacgcccaacacggtgtacgtccaggtcggcgacgccttccgcgaccactcctgctgggagcgccccgaggacatggacaccccgcgcaccgtctacaaggtcgacccctcccaccccggctccgacgtcgccgccgagaccgccgccgccctcgccgccgcctccatcgtcttccgcgacgccgaccccgactactccaaccgcctcctcgaccgcgccatccaggtgttcgagttcgcggacaagtacaggggcccatacagcagcagcctgcacgcggccgtgtgcccctgctactgcgactactccggctacaaggacgagttgctgtggggcgcggcgtggctgcacaaggcgtcgcggcgccgggagtaccgcgactacatcaagcggaacgaggtggtgctcggcgccagcgaggccatcaacgagttcggctgggacaacaagcacgccggcatcaacgtcctcatctccaaggaggtcctgatggggaaggacgagtatttccagtcgttccgcgtgaacgccgacaacttcatctgcaccctcctccccggcatctctaatcatccccagatccagtactccccaggtgggctgctgttcaaggtgggcaacagcaacatgcagcacgtgacgtcgctgtcgttcctcctcctcgcatactccaactatctcagccacgccaacgtccgcgtcccctgcggcacctcctccgcctcccccgtccagctccgacgcgtcgccaagcgccaggtggactacatcctgggcgacaacccgctgcggatgtcgtacatggtgggttacgggtcgaggtacccgctgcggatccaccaccgggggagctcgctgccgtcggtggcggcgcacccggcgcagatcgggtgcaaggccggggcgacctactacgccagcgcggcgcccaacccgaacctcctggtgggcgccgtggtgggcgggcccagcaacaccagcgacgcgttccccgacgcgcgggccgtgttccagcagtccgagcccaccacgtacatcaacgccccgctcctcggcctcctcgcctacttctcggcccaccccaacctggcccagtccgatctcctctacgactgaaaatctgacggcccaacacaagtggccttccccgttttgcattggccgtagtgggccgatttgatcgagtaattggttagtaatttagtattgatcctgtagcgtgtgccgatcctttcctgtaaaaaatggcaggaacggggattggtcgtagcgtggttgtatgcactgtaccctagcattttagtagcaatttagcgtatgctggatgcgatgtcttattggcatcagatgtccatccggctatgcgatgcattctgttcggctatctactctaagcatcctttgtcaagtgtcaagggggccggaattagtgccaggattaagctttaagctaagcatatctgtaacgtcgtcgtccacaagacatgtcatgtgcagcattgggcctttttccggcttttgggattactcctcgctggaatccaaagctttgcttgaagcaggcagctattctcgtaaaaaaaaaaaa

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