2024-09-29 10:31:33, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001421374 3480 bp mRNA linear PLN 18-MAY-2023 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein ROC8-like (LOC4340445), mRNA. ACCESSION NM_001421374 XM_015786612 VERSION NM_001421374.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AP014962.1 and AB101651.1. On May 18, 2023 this sequence version replaced XM_015786612.2. ##Evidence-Data-START## RNAseq introns :: mixed sample support SAMD00008650, SAMN02298005 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-623 AP014962.1 5502370-5502992 c 624-1010 AB101651.1 1-387 1011-1448 AP014962.1 5501156-5501593 c 1449-1547 AP014962.1 5500984-5501082 c 1548-1760 AP014962.1 5500669-5500881 c 1761-1938 AP014962.1 5500406-5500583 c 1939-2201 AP014962.1 5500045-5500307 c 2202-2291 AP014962.1 5499883-5499972 c 2292-3480 AP014962.1 5498576-5499764 c FEATURES Location/Qualifiers source 1..3480 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="6" /map="6" gene 1..3480 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="homeobox-leucine zipper protein ROC8-like" /db_xref="GeneID:4340445" exon 1..676 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" misc_feature 393..395 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="upstream in-frame stop codon" CDS 582..2714 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="P0664C05.15; putative homeobox; GL2-type homeodomain protein; Os06g0207966; GLABRA 2-like homeobox protein 8; HD-ZIP protein ROC8; Homeodomain transcription factor ROC8; LOC_Os06g10600; Protein RICE OUTERMOST CELL-SPECIFIC 8" /codon_start=1 /product="homeobox-leucine zipper protein ROC8" /protein_id="NP_001408303.1" /db_xref="GeneID:4340445" /translation="
MDFGDEPEGSDSQRRRKRYHRHTPRQIQQLEAMFKECPHPDENQRAQLSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFLRAENDKIRCENIAIREALKNVICPTCGGPPVGEDYFDEQKLRMENARLKEELDRVSNLTSKYLGRPFTQLPPATPPMTVSSLDLSVGGMGGPSLDLDLLSGGSSGIPFQLPAPVSDMERPMMAEMATRAMDELIRLAQAGDHIWSKSPGGGVSGGDARETLNVDTYDSIFSKPGGSYRAPSINVEGSRESGLVLMSAVALADVFMDTNKWMEFFPSIVSKAHTIDVLVNGMGGRSESLILMYEELHIMTPAVPTREVNFVRYCRQIEQGLWAIADVSVDLQRDAHFGAPPPRSRRLPSGCLIADMANGYSKVTWVEHMEVEEKSPINVLYRDLVLSGAAFGAHRWLAALQRACERYASLVALGVPHHIAGVTPEGKRSMMKLSQRMVNSFCSSLGASQMHQWTTLSGSNEVSVRVTMHRSTDPGQPNGVVLSAATSIWLPVPCDHVFAFVRDENTRSQWDVLSHGNQVQEVSRIPNGSNPGNCISLLRGLNASQNSMLILQESCTDASGSLVVYSPIDIPAANVVMSGEDPSSIPLLPSGFTILPDGRPGSAAGASTSSAGPLAAARGGGGGGAGGGSVVTVAFQILVSSLPSSKLNAESVATVNGLITTTVEQIKAALNCSAHGHHP"
misc_feature 582..650 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="propagated from UniProtKB/Swiss-Prot (Q69T58.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 627..794 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 1182..1889 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins; Region: START_ArGLABRA2_like; cd08875" /db_xref="CDD:176884" misc_feature order(1266..1271,1320..1322,1386..1388,1392..1394, 1425..1427,1437..1439,1449..1451,1458..1463,1476..1481, 1557..1559,1563..1574,1581..1583,1590..1592,1596..1598, 1602..1604,1650..1652,1704..1706,1710..1721,1725..1727, 1761..1763,1767..1769,1773..1775,1779..1781,1785..1787, 1791..1793,1812..1814,1818..1826,1830..1838,1845..1850, 1857..1859) /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="putative lipid binding site [chemical binding]; other site" /db_xref="CDD:176884" misc_feature 2469..2531 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /note="propagated from UniProtKB/Swiss-Prot (Q69T58.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 677..794 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 795..980 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 981..1448 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 1449..1547 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 1548..1760 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 1761..1938 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 1939..2201 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 2202..2291 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" exon 2292..3480 /gene="LOC4340445" /gene_synonym="GL2-8; Roc8" /inference="alignment:Splign:2.1.0" ORIGIN
cttatttcgcaccggttactactctactgctgctgcttctgctactgcactactactacactcatactctcttctctctcctgttcttgattttctctctcctcctctacgcgaggagaggagctagctagcgcacaccagcggcagcagcaggagaaagattggcacgaacagtccagaaaactagtagtagcagaagaggatacagggagagagatcagataagcgagcgtttctgatgatggagaggagatagagggataagcgcgagcaagattggaatcagcgtggtggtggtaggggaggggatggatgatatggcgtgacggaagggggggtttggattggatgagttgaggtgcctgcaaattccttcctgttttggatcgctgtgagttgggaattcctgtataaatacggccccgagaggggacgcagagatcaagaacagtgcaaagatcaatcgatccatccatctctccccctcctcctgctgctgctgttgttgcgagagagagagagagagagagagagagagagagagagaggaagaggcagaggtagtagcagcggcggcggccatggatttcggcgacgaacccgagggctccgacagccagcgccgccgcaagcgctaccaccgccacacgcctcgccagattcagcagctcgaggcgatgttcaaggagtgcccccacccggacgagaaccagcgggcgcagcttagccgggagctcgggttggagccgaggcagatcaagttctggttccagaatcgccggacccagatgaaggcgcagcacgagcgggcggacaactgcttcctccgcgccgagaacgacaagatccggtgcgagaacatcgccatccgcgaggccctcaagaacgtcatctgccccacctgcggcggccctcccgtcggcgaggactacttcgacgagcagaagcttcgcatggagaacgcccgcctcaaggaagagctggaccgcgtgtcgaacctgacgtcgaagtatctcggccggccgttcacgcagctgccgccggcgacgccgccgatgacggtgtcgtcgctggacctgtccgtgggcgggatgggcgggccgtcgctggacctggacctcctcagcggtggctcgtcggggatcccgttccagctgccggcgcccgtgtccgacatggagcggcccatgatggccgagatggccacgcgcgccatggacgagctgatccgcctcgcgcaggccggcgaccacatctggtccaagagccccggcggcggcgtgtccggcggcgacgcccgcgagaccctcaacgtcgacacctacgacagcatcttctccaagcccggcggctcgtaccgcgcccccagcatcaacgtcgaggggtcccgcgagtccggcctcgtgctcatgagcgccgtcgccctcgccgacgtgttcatggacacgaacaagtggatggagttcttcccaagcatcgtgtccaaagctcacaccattgatgtgctcgtgaatggcatgggagggagaagcgagtccttgattctgatgtacgaggagctgcacatcatgacgccggccgtcccgacccgggaggtgaacttcgtccgctactgccggcagatcgagcaggggctatgggccatcgccgacgtctccgtcgacctgcagcgcgacgcccacttcggcgcgccgccgccgcgctcccgccggctcccttcggggtgcctcatcgctgacatggccaatggctactccaaggtgacctgggtcgaacacatggaggtggaggagaagagcccgatcaacgtgctgtaccgtgacctcgtgctgagcggcgccgcgttcggggcgcaccgctggctcgccgcgctccagcgcgcgtgcgagcgctacgcctccctcgtcgcgctcggcgtcccgcaccacatcgccggtgtgacgccggaggggaagaggagcatgatgaagctgtcgcagcggatggtgaacagcttctgctcgagcctgggggcgtcgcagatgcaccagtggacgacgctgtcgggctccaacgaggtgagcgtccgcgtcaccatgcaccggagcacggaccccggccagcccaacggcgtcgtcctcagcgccgccacctccatctggctccccgtcccctgcgaccacgtcttcgccttcgtccgcgacgagaacacccgctcccagtgggacgtcctgtcgcacggcaatcaagtccaggaagtgtcgcgcatccccaacggctcaaacccggggaactgcatctcgctgctaagaggcttgaatgcgagccagaacagcatgctgatactgcaggagagctgcacggacgcgtcggggtcgctggtggtgtactcgccgatcgacatcccggcggcgaacgtcgtgatgagcggtgaggacccgtcgagcatcccgctgctgccgtcggggttcaccatcctccccgatggccgcccgggctcggcggcgggggcgtcgaccagcagcgcggggccgctcgccgccgcgcgcggcgggggcggcgggggcgctggcggcgggtccgtcgtcaccgtcgcgttccagatcctcgtcagcagcctgccgtcgtcgaagctcaacgccgagtctgtcgccaccgtcaacgggctgatcaccaccaccgtcgagcagatcaaggccgcgctcaactgctccgcccatggccaccacccctgatcgccgccgccgccgccaccgagctcgccattgcattgcacccgcttcgccatcatcggaggagagagagttggttggcgcgttgaatgctcgcattcatggactccacctgctgctgctgctgctgctgcatctgaagctgatgcaactctctctctatctatctctctctttcgcccatccattatccagctagccatgatccatccatcaaaccatgcatcgttaaaaaaaaataactcttgtttaggttttcgttgcatttttgcatatctttttttttctttctcctctctcatcagattgcaggaatttcattcgggttttttttatttttttttcattttcgatcgctcttaggcatttatgcaagtcagtcaatcaatcagttttcaggacatcaccaatcaaccaatcaacagaaggctttcagaacgagggagtcaagaacgcaccatgcttgtcacttttcctcttgttgtaaccaccaaatcacacaccaccaccatcacaaaccacaaattttcttttcctctttctttttcacccattggatttgttccgttttgatcatatcatcatccatgcatcatcatccatccatccatatgcatccttgtcacctcgcgcgttgtcgctggtgttgtagcagcagaggatgaatggttcgggtattgacttctgtccattaatgtaaagccttcaatgaacattcatttcggttataaatggaaagagaaaaaaacaaacagagagtgctggtaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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