2024-09-29 10:28:33, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001421067 1395 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX2-like (LOC4340070), mRNA. ACCESSION NM_001421067 XM_015786353 VERSION NM_001421067.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1395) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI295463.1, AK105150.1 and CI136537.1. On May 10, 2023 this sequence version replaced XM_015786353.2. ##Evidence-Data-START## Transcript exon combination :: AK105150.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-222 CI295463.1 1-222 223-1056 AK105150.1 223-1056 1057-1395 CI136537.1 82-420 FEATURES Location/Qualifiers source 1..1395 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="6" /map="6" gene 1..1395 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="homeobox-leucine zipper protein HOX2-like" /db_xref="GeneID:4340070" exon 1..469 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /inference="alignment:Splign:2.1.0" CDS 53..979 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="OSJNBa0041F13.48; homeodomain leucine zipper protein; HD-ZIP protein HOX2; Homeodomain transcription factor HOX2; LOC_Os06g04870" /codon_start=1 /product="homeobox-leucine zipper protein HOX2" /protein_id="NP_001407996.1" /db_xref="GeneID:4340070" /translation="
MMDLGLSLGLGLASQGSLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASGKRERELERSGSGVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAVAGGNVLPSHCQFFPAAAAAADRTSQSTWNAAAPLVTRELF"
misc_feature 95..160 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="propagated from UniProtKB/Swiss-Prot (Q5VPE3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 263..403 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="propagated from UniProtKB/Swiss-Prot (Q5VPE3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 392..556 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" misc_feature 560..694 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="propagated from UniProtKB/Swiss-Prot (Q5VPE3.1); Region: Leucine-zipper" misc_feature 560..>664 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /note="homeobox associated leucin zipper; Region: HALZ; smart00340" /db_xref="CDD:128634" exon 470..1395 /gene="LOC4340070" /gene_synonym="HOX2; OsHox2; OsJ_019261; OsJ_20069" /inference="alignment:Splign:2.1.0" ORIGIN
atctcctccacctcctccacctcgccgccatttgatcgaacacctgatagccatgatggatctcggcctcagcctcggcctcggcctcgcctcgcagggcagcctcacctcctccaccaccaccacctcctcccccggcgccggatcatcctccccgtgggccgccgcgctcaactccatcgtcggcgacgtgaggcgggatcaggccgcggcgcatgctgccgcggcggtgggggttggggttgggggcgaggagatgtaccaggggagggcgtccacgtcgccggacagcgcggcggcgctgtcgagcgcgagcgggaagagggagagggagctggagcggtcgggatccggggttgacgacgacgacggcgcggacggcgccggcgggcggaagaagctcaggctgtccaaggaccaggccgccgtgctcgaggagtgcttcaagacgcactccactctcaaccccaagcagaaggtggcgctggcgaacaggctggggctgcggccgcggcaggtggaggtgtggttccagaaccggagggcgaggacgaagctgaagcagacggaggtggactgcgagtacctgaagcggtggtgcgagcgcctcgccgacgagaacaagcgcctcgagaaggagctcgccgacctcagggcgctcaaggccgcgccctcgccggcgtccgcgtccgcgatgcagccctcctcctccgccgccgccacgctcaccatgtgcccctcctgccgccgcgtcgccaccgccggcgcgccgcaccagcctaaccaccaacaatgccatcccaaatctaacaccaccatctcctcctcctccaccgccgccgccgccgtcgccgtcgccggcggcaacgtgctgcccagccactgccagttcttcccggccgccgccgccgccgccgaccggacaagccagagcacgtggaacgccgccgcgccgctcgtcaccagagagctcttctagaaacaatccatccatcgccatgacaaacttgggaaaggatcaagctttgattggtcaagacagtgtttttaccaggtggtgatttggttaattaattaattataattaatcactcaagaggaggggattaattgccttgatttggtacctaattactagtatgattagcagtagtagtagtagcagcaaatttggtttggattaattcagtttgattccatgatatgaacaaaggaacaaagcaacaaaaaaatggccgtctgctttttcttggacggcattcttatatgtaccaattcaccaaatctgctggttggtggattaacagcttgataattggtatattgattgtactactaccactaattgattgaattatgagaaaagttaatgaaatcttttctaattcttcagca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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