2024-09-29 10:36:38, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001420155 1884 bp mRNA linear PLN 14-JUN-2024 DEFINITION Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 2, mRNA. ACCESSION NM_001420155 VERSION NM_001420155.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1884) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1884) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from D41025.1, CA755100.1, CB672108.1, CB651775.1, CB638132.1 and CI516736.1. ##Evidence-Data-START## Transcript exon combination :: AK065206.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-227 D41025.1 1-227 228-645 CA755100.1 202-619 646-1066 CB672108.1 364-784 1067-1136 CB651775.1 650-719 c 1137-1714 CB638132.1 76-653 c 1715-1884 CI516736.1 219-388 FEATURES Location/Qualifiers source 1..1884 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="5" /map="5" gene 1..1884 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="aspartic proteinase-like" /db_xref="GeneID:4337744" exon 1..68 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 69..425 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" misc_feature 78..80 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="upstream in-frame stop codon" CDS 93..1583 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /EC_number="3.4.23.-" /note="aspartic proteinase; LOC_Os05g04630" /codon_start=1 /product="aspartic proteinase precursor" /protein_id="NP_001407084.1" /db_xref="GeneID:4337744" /translation="
MAKRHLLLVTTCLWALSCALLLHASSDGFLRVNLNKKRLDKEDLTAAKLAQQGNRLLKTGSSDSDPVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDASSGGELVFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA"
sig_peptide 93..164 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 270..1580 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /product="Aspartic proteinase. /id=PRO_0000025911" /note="propagated from UniProtKB/Swiss-Prot (P42211.2)" misc_feature 291..1574 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Phytepsin, a plant homolog of mammalian lysosomal pepsins; Region: phytepsin; cd06098" /db_xref="CDD:133162" misc_feature order(309..311,318..326,330..332,561..566,612..614, 630..632,747..749,774..791,801..803) /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="propeptide binding site [active]" /db_xref="CDD:133162" misc_feature order(375..386,936..947) /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="catalytic motif [active]" /db_xref="CDD:133162" misc_feature order(375..377,936..938) /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="catalytic residue [active]" /db_xref="CDD:133162" misc_feature 498..530 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Active site flap [active]" /db_xref="CDD:133162" misc_feature 1020..1121 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Saposin-like type B, region 2; Region: SapB_2; pfam03489" /db_xref="CDD:460945" misc_feature 1194..1307 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Saposin-like type B, region 1; Region: SapB_1; pfam05184" /db_xref="CDD:461575" misc_feature 1251..1253 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255|PROSITE-ProRule:PRU00415; propagated from UniProtKB/Swiss-Prot (P42211.2); glycosylation site" exon 426..486 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 487..581 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 582..694 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 695..968 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 969..1082 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1083..1147 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1148..1289 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1290..1409 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1410..1498 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1499..1866 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" ORIGIN
ggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgagcaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattcttcagtaaggataatgtgttggttggagaccttgtagtgaaaaaccagaagttcattgaggcaacacgcgaaacaagcgttacctttatcatcggaaagtttgatggaattcttggtcttggctaccctgaaatctctgttgggaaagctcctccgatttggcagagcatgcaggagcaggaactgcttgcagatgatgtcttctcgttttggctgaaccgagacccggatgcatcctctggtggtgagctcgtctttggtggcatggatccgaagcattataagggggatcacacctacgtccctgtttcccgcaaaggctactggcagtttaacatgggggatctccttattgatggccactcaactggcttctgtgcaaaaggctgtgctgctattgtcgactccggaacttccttgcttgctggtccaacagctatagttgctcaggtgaaccatgctattggggctgaaggaatcatcagcacggaatgcaaagaagtggttagcgagtatggagagatgatcctcaacttgctcatagcacagacagatccgcagaaagtatgcagccaggttggtctgtgtatgtttgacggtaaacgctcagtaagcaatgggattgaatctgttgtcgacaaagaaaacttgggttctgatgctatgtgttcagtttgtgagatggctgttgtgtggatagagaaccagctacgcgaaaataaaacgaaggagctgatattgaattatgctaatcagttatgtgagcgtctaccaagccccaatggagaatcaactgtcagctgccatcaaatctcgaagatgcctaatcttgcattcaccattgcaaacaagacatttattcttacaccagagcagtacatcgtgaaactggagcaaggagggcaaaccgtctgcatcagcgggttcatggcgttcgacatacctccaccacgcggtcctctttggattcttggagatgtcttcatgggtgcttatcatacggttttcgacttcggcaaagacaggatcgggttcgctaaatctgcatgaagagtgtatgtagatcactcttcagatcacggagattagcctgtatatttcataagctgaaaccaaacatgtatggttttatgatatatagtagctagtacacggacaaacctctttggttgcttctttctgaagaaaaaagaagaacagacatggatgtatgatctacctgatgtgtataaattgaatgatgcagtctgagaaataatcctctgatcatattgtggattctgaaatatatccgagtttcttttttcaacaaagatgatgcgttccaagtgtaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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