2024-09-29 10:38:00, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001420154 1980 bp mRNA linear PLN 14-JUN-2024 DEFINITION Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 1, mRNA. ACCESSION NM_001420154 VERSION NM_001420154.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1980) AUTHORS Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G., Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A., Soderlund,C. and Wang,G.L. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1980) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI626837.1, CA755100.1, CB672108.1, CB651775.1, CB638132.1 and CI516736.1. ##Evidence-Data-START## Transcript exon combination :: D12777.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-379 CI626837.1 2-380 380-741 CA755100.1 258-619 742-1162 CB672108.1 364-784 1163-1232 CB651775.1 650-719 c 1233-1810 CB638132.1 76-653 c 1811-1980 CI516736.1 219-388 FEATURES Location/Qualifiers source 1..1980 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="5" /map="5" gene 1..1980 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="aspartic proteinase-like" /db_xref="GeneID:4337744" exon 1..167 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 168..521 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" misc_feature 174..176 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="upstream in-frame stop codon" CDS 189..1679 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /EC_number="3.4.23.-" /note="aspartic proteinase; LOC_Os05g04630" /codon_start=1 /product="aspartic proteinase precursor" /protein_id="NP_001407083.1" /db_xref="GeneID:4337744" /translation="
MAKRHLLLVTTCLWALSCALLLHASSDGFLRVNLNKKRLDKEDLTAAKLAQQGNRLLKTGSSDSDPVPLVDYLNTQYYGVIGLGSPPQNFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYNSKKSSSYKADGETCKITYGSGAISGFFSKDNVLVGDLVVKNQKFIEATRETSVTFIIGKFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDASSGGELVFGGMDPKHYKGDHTYVPVSRKGYWQFNMGDLLIDGHSTGFCAKGCAAIVDSGTSLLAGPTAIVAQVNHAIGAEGIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLCMFDGKRSVSNGIESVVDKENLGSDAMCSVCEMAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA"
sig_peptide 189..260 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="COORDINATES: ab initio prediction:SignalP:6.0" mat_peptide 366..1676 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /product="Aspartic proteinase. /id=PRO_0000025911" /note="propagated from UniProtKB/Swiss-Prot (P42211.2)" misc_feature 387..1670 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Phytepsin, a plant homolog of mammalian lysosomal pepsins; Region: phytepsin; cd06098" /db_xref="CDD:133162" misc_feature order(405..407,414..422,426..428,657..662,708..710, 726..728,843..845,870..887,897..899) /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="propeptide binding site [active]" /db_xref="CDD:133162" misc_feature order(471..482,1032..1043) /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="catalytic motif [active]" /db_xref="CDD:133162" misc_feature order(471..473,1032..1034) /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="catalytic residue [active]" /db_xref="CDD:133162" misc_feature 594..626 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Active site flap [active]" /db_xref="CDD:133162" misc_feature 1116..1217 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Saposin-like type B, region 2; Region: SapB_2; pfam03489" /db_xref="CDD:460945" misc_feature 1290..1403 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="Saposin-like type B, region 1; Region: SapB_1; pfam05184" /db_xref="CDD:461575" misc_feature 1347..1349 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /note="N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255|PROSITE-ProRule:PRU00415; propagated from UniProtKB/Swiss-Prot (P42211.2); glycosylation site" exon 522..582 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 583..677 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 678..790 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 791..1064 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1065..1178 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1179..1243 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1244..1385 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1386..1505 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1506..1594 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" exon 1595..1962 /gene="LOC4337744" /gene_synonym="OJ1127_B08.13; RAP" /inference="alignment:Splign:2.1.0" ORIGIN
gttactctgatgaagtctcaagagaagaaagagaagaggttgctgtatttatcgtctttgtcctcatctttctttcttgctttcctctaccttgactttggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattcttcagtaaggataatgtgttggttggagaccttgtagtgaaaaaccagaagttcattgaggcaacacgcgaaacaagcgttacctttatcatcggaaagtttgatggaattcttggtcttggctaccctgaaatctctgttgggaaagctcctccgatttggcagagcatgcaggagcaggaactgcttgcagatgatgtcttctcgttttggctgaaccgagacccggatgcatcctctggtggtgagctcgtctttggtggcatggatccgaagcattataagggggatcacacctacgtccctgtttcccgcaaaggctactggcagtttaacatgggggatctccttattgatggccactcaactggcttctgtgcaaaaggctgtgctgctattgtcgactccggaacttccttgcttgctggtccaacagctatagttgctcaggtgaaccatgctattggggctgaaggaatcatcagcacggaatgcaaagaagtggttagcgagtatggagagatgatcctcaacttgctcatagcacagacagatccgcagaaagtatgcagccaggttggtctgtgtatgtttgacggtaaacgctcagtaagcaatgggattgaatctgttgtcgacaaagaaaacttgggttctgatgctatgtgttcagtttgtgagatggctgttgtgtggatagagaaccagctacgcgaaaataaaacgaaggagctgatattgaattatgctaatcagttatgtgagcgtctaccaagccccaatggagaatcaactgtcagctgccatcaaatctcgaagatgcctaatcttgcattcaccattgcaaacaagacatttattcttacaccagagcagtacatcgtgaaactggagcaaggagggcaaaccgtctgcatcagcgggttcatggcgttcgacatacctccaccacgcggtcctctttggattcttggagatgtcttcatgggtgcttatcatacggttttcgacttcggcaaagacaggatcgggttcgctaaatctgcatgaagagtgtatgtagatcactcttcagatcacggagattagcctgtatatttcataagctgaaaccaaacatgtatggttttatgatatatagtagctagtacacggacaaacctctttggttgcttctttctgaagaaaaaagaagaacagacatggatgtatgatctacctgatgtgtataaattgaatgatgcagtctgagaaataatcctctgatcatattgtggattctgaaatatatccgagtttcttttttcaacaaagatgatgcgttccaagtgtaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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