LOCUS       NM_001420127            1951 bp    mRNA    linear   PLN 15-JUL-2024
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 10
            (LOC4337701), mRNA.
ACCESSION   NM_001420127 XM_015782412
VERSION     NM_001420127.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE   2  (bases 1 to 1951)
  AUTHORS   Ito,Y., Eiguchi,M. and Kurata,N.
  TITLE     Expression of novel homeobox genes in early embryogenesis in rice
  JOURNAL   Biochim Biophys Acta 1444 (3), 445-450 (1999)
   PUBMED   10095070
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI740419.1, AK111878.1, CI144238.1 and CI522444.1.
            
            On Apr 26, 2023 this sequence version replaced XM_015782412.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK111878.1, AB007624.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN09515981,
                                           SAMN37494762 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               CI740419.1         2-221
            221-1045            AK111878.1         116-940
            1046-1640           CI144238.1         1-595
            1641-1951           CI522444.1         120-430
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="5"
                     /map="5"
     gene            1..1951
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="homeobox protein knotted-1-like 10"
                     /db_xref="GeneID:4337701"
     exon            1..836
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    561..563
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="upstream in-frame stop codon"
     CDS             606..1541
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="KNOX class 1 homeodomain protein; Homeobox protein
                     HOS9; Homeobox protein OSH71; Homeobox protein
                     knotted-1-like 2; LOC_Os05g03884; OSJNBa0056I11.15"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 10"
                     /protein_id="NP_001407056.1"
                     /db_xref="GeneID:4337701"
                     /translation="

MEDLYSIHPGISRGGGGGGGGAASEASGVAGGGSSPPHPPPPATTAAAADLTELMKAQIAGHPSYPSLLSAYIECRKVGAPPEVTTLLEEIGREGRGGGGGATAGGEIGLDPELDEFMETYCRVLERYKEELTRPFDEAASFLTGIHTQLASLCGGAPPPTDNSDEMVGSSEDEPCSGDADAADFGQEHSSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKRHWKPSEDMRFALMEGVTGGSSSGTTLYFDTGTIGP"

     misc_feature    606..740
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7GDL5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    765..869
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:461051"
     misc_feature    936..1067
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    1062..1157
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7GDL5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1194..1259
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    1317..1433
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            837..959
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1098
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..1349
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1350..1951
                     /gene="LOC4337701"
                     /gene_synonym="HOS9; OSH71; Oskn2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgacacctcctaagaaaattctgaaaaaaaattgcttagttgcttttgtttagaagaaaattatattaaaaaggttgctggcttagctattccttcctttctcccaatctttgtttccatgtctgtctgaattctgatctcttcttctctctgcctgcagacacaagcaggtgactcctccatcctcccaaagcaaagcacccatgtatcccgctgctgccgctgctacctacaagtgcaccctgcagaagctgcttctccttctccttctgatctgaggagctgcagctgctgctccagcagcagaggctgcagtgcaatccgctgccaaattcctcttcttctccttcctactagcttttctcttcttcttcttcttcttcttggaaagctggaacttggagctgcttaagcttacacctgctgattcatctccagctgctgctgctgctgattcagtattattatgtgtggagatgtacagtagatgaggaggaaggaagtagctactggatagctagctgagctgagctaagctgagctaagcttcttggctaggtaggtagctagaggtgaggtgaggtgggggaagaggggattggacatggaggatctgtacagcatccacccgggaatctcccgcggcggcggtgggggaggaggaggtgcggccagcgaggcgtccggggtcgccggaggggggagctcgccgccgcatcccccaccgccggcgacgacggcggcggcggcggatctgacggagctgatgaaggcgcagatcgccggccacccgagctacccttccctcctctccgcctacatcgaatgccgcaaggttggtgcgccgccggaggtgaccacgctgctggaggagatcggccgggaggggcgcggcggcggcggcggcgcgacagccggcggggaaattggcctcgatccggagctcgacgagttcatggagacgtactgccgggtgctggagcggtacaaggaagaactcacacggccgttcgacgaggcggcctccttcctcaccggcatccacacccagctcgcctccctctgtggcggcgcgccgccgcccaccgacaactccgatgaaatggtggggtcttcagaggatgagccgtgctcaggagacgccgatgcagcagattttgggcaagaacacagctcccgcttggctgaccatgagctcaaagagatgttgctcaagaagtacagtggctgcctcagccgcctccggtccgagttcttgaagaagaggaagaaagggaaactaccgaaagacgcgcgatcggcacttatggactggtggaacacacattaccgttggccttaccccacggaagaggataaggtgaggctggccgcgatgactggcctcgacccgaagcagatcaacaactggttcatcaaccagaggaagaggcactggaagccatcggaggacatgcggttcgcgctcatggagggggtcaccggaggatcctcctccgggacgacactgtacttcgacaccggcacaattggtccatgatcagattgcactccaaattaaatgtagcaccttgcaacagacattggcaggtattacctgctgctacaccctctgtgaggagcaagggatgatcatatattaaaaggaaaaaaagatgaaatcaatcaataacctcatcattttgtcgaaattattgtgtatatggtgttgtaagagggagttgggatgacctgtaaaaacttgcctgcattcagctaccataacattaattaattgtttgtatccctgacaactgcatccccagttaaaaccattttagacaggaaagagtgaactatgagtaatagtaacatgtagcaataataaagatacttattttttcccttgcatttcatattgctgccaattgttggcatgcacatgtgtgatgtctgtgtctaattgtgacc

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