2024-09-29 10:18:40, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001419728 1444 bp mRNA linear PLN 19-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox-leucine zipper protein HOX17-like (LOC4336580), mRNA. ACCESSION NM_001419728 XM_015779052 VERSION NM_001419728.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1444) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK122006.1 and CI129715.1. On Apr 14, 2023 this sequence version replaced XM_015779052.2. ##Evidence-Data-START## Transcript exon combination :: AK122006.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN07627064 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1075 AK122006.1 2-1076 1076-1444 CI129715.1 98-466 FEATURES Location/Qualifiers source 1..1444 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="4" /map="4" gene 1..1444 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="homeobox-leucine zipper protein HOX17-like" /db_xref="GeneID:4336580" exon 1..241 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /inference="alignment:Splign:2.1.0" misc_feature 88..90 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="upstream in-frame stop codon" CDS 139..882 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="HD-ZIP protein HOX17; Homeodomain transcription factor HOX17; LOC_Os04g46350; OSJNBa0065H10.13" /codon_start=1 /product="homeobox-leucine zipper protein HOX17" /protein_id="NP_001406657.1" /db_xref="GeneID:4336580" /translation="
MMERAEDLRLSLSLSSPLIAPRTHHVAMLFHAPPEKRFLEMPLLPAAKRSEVVAAEEERAGLRGGGGSDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAAGGGSVVDTAADGGILCHRPIAVRPQQS"
misc_feature 310..381 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="propagated from UniProtKB/Swiss-Prot (Q0JB92.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(379..390,394..396,445..447,463..465,502..504, 508..513,520..525,529..537,541..546) /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 379..543 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" misc_feature order(382..384,391..393,511..513,520..525,532..534) /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 547..684 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="propagated from UniProtKB/Swiss-Prot (Q0JB92.1); Region: Leucine-zipper" misc_feature 547..675 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /note="homeobox associated leucin zipper; Region: HALZ; smart00340" /db_xref="CDD:128634" exon 242..456 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /inference="alignment:Splign:2.1.0" exon 457..536 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /inference="alignment:Splign:2.1.0" exon 537..1412 /gene="LOC4336580" /gene_synonym="HOX17; OsHox17" /inference="alignment:Splign:2.1.0" ORIGIN
acttccaagttccaactctcagctagctgcaaactctactcagtttgcatcgagatatacagagatcgagtagtcagagctgagagctagtggagagaaagcaccagggaagaacgcagagagaggttacagggagcgatgatggagagggccgaggacctgcgcctgagcctcagtctcagctcgccgcttattgctcctcgtactcaccatgtcgccatgctgttccacgctcctccagagaaaagattcctggagatgccgctgctccctgctgcgaagcggagcgaggtcgtcgcggcagaagaggagcgcgcgggcctgcgcggcggcggcggcagcgacgaggaggacggtggctgcggcatcgacggctcacgcaagaagctccggctttccaaggaccagtccgccgtgctcgaggacagcttccgggagcaccccaccctcaaccccaggcagaaggcaactttggcgcagcagctcgggcttcggcctcggcaggtcgaggtgtggtttcagaacagacgcgcaaggacgaagctgaagcagacggaggtggactgcgagttcctgaagcgctgctgcgagacgctcacggaggagaaccggaggctgcagaaggaggtgcaggagctgcgagcgctcaagctcgtctcgccgcacctctacatgaacatgtccccgcccaccacgctcaccatgtgcccctcctgcgagcgcgtctccaacaccaataacaactccagcgccgccgccgccgccgaccgccgcggcatcaggactactactgccgcaggcggcggcagcgtcgtcgacaccgccgccgacgggggcatcctctgccaccgcccgatcgccgtccggccgcagcagtcatgacaagctagctagctttttacttcctagctagacagactacacccgtacactgtccccatgtgtcaacgaggcagcaagcagtgtacgtgcacattatattcgcgcaagctgtgtgtgttgcgctcaccgatcgatcgctcagttgttgtttttttcctttttgttggaagcagctagctggctagctattagcatggtgttcatgcgtcaggtggagtagtagctataggcggcgctgggatagaacaggagtgtctcggcagcttctggccggcggtggtggtgttcgcgggcgggccggctgggagctgggcgtagcgaatatttagctggtccaggggaaagttggatatggtgggatacgggtgtaggggaagtggggcgcagcgggatggcacggtggtttgttctgtcccggctgacgatgacggcgatgatgatgagagggtcagtttgtttgttggacagtcgtttctcttaagcttgattctagcgattaatttaacacgggtaggcatgtgcatttggtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]