2024-09-29 10:36:20, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001418837 775 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group thioredoxin H2-2-like (LOC4334453), mRNA. ACCESSION NM_001418837 XM_015776218 VERSION NM_001418837.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 775) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK062383.1, AU069205.1 and CI237600.1. On Mar 24, 2023 this sequence version replaced XM_015776218.2. ##Evidence-Data-START## Transcript exon combination :: AK062383.1, CI237600.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03003383, SAMN04338661 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-101 AK062383.1 2-102 102-397 AU069205.1 48-343 398-775 CI237600.1 173-550 FEATURES Location/Qualifiers source 1..775 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..775 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="thioredoxin H2-2-like" /db_xref="GeneID:4334453" exon 1..245 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /inference="alignment:Splign:2.1.0" CDS 108..512 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="LOC_Os03g58630; OSJNBa0052F07.8" /codon_start=1 /product="thioredoxin H2-2" /protein_id="NP_001405766.1" /db_xref="GeneID:4334453" /translation="
MGSFFSTMFTPPPAADDGGDSRVVAVHSTATWDEQWGAHKSNPNKLIVIDFSATWCGPCRFIEPAFKDMAGRFADAVFFKIDVDELSEVARQWKVEAMPTFVLIKGGKEVSRVVGAKKDELERKVNMFISSSSS"
misc_feature 108..167 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="propagated from UniProtKB/Swiss-Prot (Q851R5.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 237..485 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947" /db_xref="CDD:239245" misc_feature 255..257 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="Deprotonates C-terminal active site Cys. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q851R5.1); other site" misc_feature order(273..275,282..284) /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="catalytic residues [active]" /db_xref="CDD:239245" misc_feature 276..278 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="Contributes to redox potential value. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q851R5.1); other site" misc_feature 279..281 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /note="Contributes to redox potential value. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q851R5.1); other site" exon 246..368 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /inference="alignment:Splign:2.1.0" exon 369..747 /gene="LOC4334453" /gene_synonym="OsJ_12982; OsTrx10; OsTrxh2-2" /inference="alignment:Splign:2.1.0" ORIGIN
aaaaaccaacaagaagagttgttgcttgcgctcacgcgaagcgaagaggagcaaggcgagaaaagagagagagagagagagagaaccaaaccaagcacgcgaccgagatgggctccttcttctcgacgatgttcacgccgccgcccgccgccgacgacggcggcgactcgcgcgtggtggccgtccactccacggccacctgggacgagcagtggggcgcccacaagagcaaccccaacaagctgatcgtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccggccttcaaggacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacgaactttcggaagtggcgaggcaatggaaagtggaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggtgctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcctaaatcccaaacttatgcctgcattcctcatttagtaccaggctctggtttctctcggtgctaggagtgagagaccctgtggttgtcctcttaaaaatgctgcaaaattcgatgtgaagtgggagtaaacgcgtttaagacaataaacttgtgatacttgggaatggaaatgtaattgcctgttgctcttgagtcatcatctgatcatattcaattctttattgatatttccgcaataaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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