2024-09-29 10:36:42, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001418724 1407 bp mRNA linear PLN 20-FEB-2024 DEFINITION Oryza sativa Japonica Group homeobox protein knotted-1-like 8 (LOC4334261), mRNA. ACCESSION NM_001418724 XM_026023682 VERSION NM_001418724.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1407) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK107296.1. On Mar 23, 2023 this sequence version replaced XM_026023682.1. ##Evidence-Data-START## Transcript exon combination :: AK107296.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMN02716061 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1407 AK107296.1 1-1407 FEATURES Location/Qualifiers source 1..1407 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..1407 /gene="LOC4334261" /gene_synonym="OSH43" /note="homeobox protein knotted-1-like 8" /db_xref="GeneID:4334261" exon 1..455 /gene="LOC4334261" /gene_synonym="OSH43" /inference="alignment:Splign:2.1.0" misc_feature 78..80 /gene="LOC4334261" /gene_synonym="OSH43" /note="upstream in-frame stop codon" CDS 141..1151 /gene="LOC4334261" /gene_synonym="OSH43" /note="Os03g0771400; Homeobox protein OSH43; LOC_Os03g56110; OSJNBa0072F13.3" /codon_start=1 /product="homeobox protein knotted-1-like 8" /protein_id="NP_001405653.1" /db_xref="GeneID:4334261" /translation="
MESFASLAGGGSSSTTARLPELISPENPDHISPPPLLYQLLAGPESSARQHGHDGHHHGGGGGEAAAAAVQGQVSPAGAEAAVKAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQLDEADGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPILEAAEFFSRVETQLDSLAGTGSSEEEQDPSDKQLKHQLLRKYGGSLGDLRQVFSKRTKKGKLPKEARQKLLHWWELHYKWPYPSEMEKMTLAQTTGLDQKQINNWFINQRKRHWKPTPVAGTAFPTMEAAGGGFRHSGHGGGLAAAAALPLYMGRPFVVDGMYRLGS"
misc_feature 141..356 /gene="LOC4334261" /gene_synonym="OSH43" /note="propagated from UniProtKB/Swiss-Prot (Q10ED2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 384..503 /gene="LOC4334261" /gene_synonym="OSH43" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:461051" misc_feature 501..584 /gene="LOC4334261" /gene_synonym="OSH43" /note="propagated from UniProtKB/Swiss-Prot (Q10ED2.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 564..698 /gene="LOC4334261" /gene_synonym="OSH43" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 747..809 /gene="LOC4334261" /gene_synonym="OSH43" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature order(813..827,831..833,891..893,909..911,948..950, 954..959,966..971,975..983,987..992) /gene="LOC4334261" /gene_synonym="OSH43" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(819..821,828..830,957..959,966..971,978..980) /gene="LOC4334261" /gene_synonym="OSH43" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 867..983 /gene="LOC4334261" /gene_synonym="OSH43" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 456..593 /gene="LOC4334261" /gene_synonym="OSH43" /inference="alignment:Splign:2.1.0" exon 594..702 /gene="LOC4334261" /gene_synonym="OSH43" /inference="alignment:Splign:2.1.0" exon 703..899 /gene="LOC4334261" /gene_synonym="OSH43" /inference="alignment:Splign:2.1.0" exon 900..1407 /gene="LOC4334261" /gene_synonym="OSH43" /inference="alignment:Splign:2.1.0" ORIGIN
ctcttcacattccctgcatccatccatctcaaccaccaccacctcatttcaggagatcatctcctccttttctttgctagggtttgtttgccataactactatctatcgcctcttcttcacctcacctgtcctgtcggccatggagagcttcgccagtctcgcaggaggtggcagcagcagcaccacagctcggttgccggagctgatctcgccggagaacccggaccacatctcgccgcccccgttgctgtaccagctgctcgccggcccggagtcgtcggcgcggcagcatgggcatgatgggcatcaccacggcggcggtggcggcgaagcagcagcagcagctgtgcagggacaggtctcgccggcaggcgcggaggcggcggtcaaggccgagatcatgtcgcatccacagtactcggctctcctagccgcctacttaggctgcaaaaaggtcggggcgccgccggatgtactgaccaagctcacggctgtgccggcggcgcagcagctggacgaagccgacggccaccctcgtcgccggcacgagccacagcgtgatgacgacccggatcagctcgatcagttcatggacgcgtactgcagcatgctgacgaggtacagggaggagctggagcggccgatcctggaagccgcggagttcttcagcagggtggagacgcagctcgattcgctcgctggcacgggatcatcagaggaagagcaagaccctagtgacaagcagctgaagcaccagcttctgaggaagtacggtggctcgttgggcgatctccggcaggtgttctccaagaggaccaagaaagggaagcttcccaaggaggccaggcagaagcttctgcactggtgggagctgcactacaagtggccctatccctccgagatggagaagatgacgctggcgcagacgacggggctggaccagaagcagatcaacaactggttcatcaaccagaggaagcggcactggaagccgacgccggtggcaggcacggccttcccgacgatggaagctgccggaggcggcttccgacactccggccacggcggcggccttgcggcggcggcggcgctgccgctgtacatgggcaggccgttcgttgtggacggcatgtaccggctcgggtcttgaagcctctggggatcgcatggtgtttgcatggtgttttttgcttggtaaatatttgctagcagcttcccatgatcagcctgtgggatggtgaaatggaagaactgatgaatcttcatcacgatctttcctctcatttttttttctttggtgtgtgataaaagctcagatgtaccacgtactactgtctgcttctttgcaaatggatatgtaattgaaagctttaattctaaacatgggactcctccgtttttatatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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