2024-09-29 10:24:44, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001418404 1656 bp mRNA linear PLN 21-MAR-2023 DEFINITION Oryza sativa Japonica Group homeobox protein knotted-1-like 4 (LOC4333698), mRNA. ACCESSION NM_001418404 XM_015773346 VERSION NM_001418404.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from AP014959.1. On Mar 21, 2023 this sequence version replaced XM_015773346.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN02716062, SAMN03003175 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-477 AP014959.1 26586156-26586632 c 478-597 AP014959.1 26585874-26585993 c 598-709 AP014959.1 26585582-26585693 c 710-978 AP014959.1 26581935-26582203 c 979-1656 AP014959.1 26581178-26581855 c FEATURES Location/Qualifiers source 1..1656 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..1656 /gene="LOC4333698" /gene_synonym="OSH10" /note="homeobox protein knotted-1-like 4" /db_xref="GeneID:4333698" exon 1..477 /gene="LOC4333698" /gene_synonym="OSH10" /inference="alignment:Splign:2.1.0" misc_feature 181..183 /gene="LOC4333698" /gene_synonym="OSH10" /note="upstream in-frame stop codon" CDS 226..1239 /gene="LOC4333698" /gene_synonym="OSH10" /note="Homeobox protein OSH10; LOC_Os03g47016/LOC_Os03g47022; OSJNBa0035I24.12; OSJNBb0113I20.24; Os03g0673100; OsJ_011583/OsJ_011584" /codon_start=1 /product="homeobox protein knotted-1-like 4" /protein_id="NP_001405333.1" /db_xref="GeneID:4333698" /translation="
MEQQLPLLAPDSKAATSSPLCLTLDNPTSTSTSPAVPSSAPPPAAALEPSRQSFHERETDAIKAKIMSHPLYPALLRAFIDCQKVGAPPEVVGRLSALAGELDSRAEDRYLQGQSSDPELDEFMETYIDMLVSYRQELTRPIQEADQFFRNMEAQIDSFTLDDNGSEGGNSSEDEQEAGGGDMASAGLPEITSPCAEDKELKSHLLNKYSGYLSSLWRELSKKKKKGKLPRDARQKLLHWWQLHYRWPYPSELEKAALAESTGLDAKQINNWFINQRKRHWKPTPPAMEYRSLQPAGAASYGGASAGASTSGGGSAVVRGMEGQHFTGGGAYPRGDP"
misc_feature 226..393 /gene="LOC4333698" /gene_synonym="OSH10" /note="propagated from UniProtKB/Swiss-Prot (Q75LX7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 406..522 /gene="LOC4333698" /gene_synonym="OSH10" /note="KNOX1 domain; Region: KNOX1; pfam03790" /db_xref="CDD:461051" misc_feature 568..705 /gene="LOC4333698" /gene_synonym="OSH10" /note="KNOX2 domain; Region: KNOX2; pfam03791" /db_xref="CDD:427506" misc_feature 700..795 /gene="LOC4333698" /gene_synonym="OSH10" /note="propagated from UniProtKB/Swiss-Prot (Q75LX7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 823..888 /gene="LOC4333698" /gene_synonym="OSH10" /note="ELK domain; Region: ELK; pfam03789" /db_xref="CDD:427504" misc_feature 946..1062 /gene="LOC4333698" /gene_synonym="OSH10" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 478..597 /gene="LOC4333698" /gene_synonym="OSH10" /inference="alignment:Splign:2.1.0" exon 598..709 /gene="LOC4333698" /gene_synonym="OSH10" /inference="alignment:Splign:2.1.0" exon 710..978 /gene="LOC4333698" /gene_synonym="OSH10" /inference="alignment:Splign:2.1.0" exon 979..1656 /gene="LOC4333698" /gene_synonym="OSH10" /inference="alignment:Splign:2.1.0" ORIGIN
tgtatctagattttaagttcaaaccacaccctctctctctatctctctctctctctctctctcctctctctccccttctctctcacacacactctgatccaggattggaagacaatcctatagacgactagattagtgccccttcttcccctccttgctccctttaatccccctcactagtagataatttgggatattgtgattagcttggagataagtacacccatggagcagcagcttcctcttcttgcacctgactctaaggctgccacgtcgtcccccttgtgcctcaccttggacaacccaacctccacatccacctcgccggcggtgccgtcgtcggcgccgccgccggcagccgccttggaaccttctagacaatctttccatgagagggaaacggatgcaatcaaagccaagatcatgtcgcaccccctctacccggctctcctcagagccttcatagattgccagaaggtcggagctccgccggaggtcgtcggccggctttccgccctcgccggcgagctcgactcgcgtgcagaagacaggtaccttcaagggcagtcgtcagacccggagctcgacgagtttatggaaacctacattgatatgctggtgagctacaggcaggagctgacaagaccaattcaagaggccgaccagttcttcagaaacatggaggcacagatcgactcgtttacactagatgacaacggctcagaaggtggcaattcctccgaagacgagcaagaggccggcggcggcgacatggcgtcggccggcttgccggagatcaccagcccctgcgcggaggacaaggagctgaagagccacctcctgaacaagtacagcggctacctgagcagcctatggagggagctctccaagaagaagaagaaaggcaagctgccccgggacgctcgccagaagctcctccactggtggcagcttcactaccgatggccctacccatcggagctggagaaggcggcgctggcggagtcgacggggctggacgcgaagcagatcaacaactggttcatcaaccagcggaagcgccactggaagccgacgccgccggccatggagtacaggtcgttgcagcccgcaggcgccgccagctacggcggcgctagcgccggcgcttccacgagcggcggcggctccgccgtcgtccgcggcatggaagggcagcacttcaccggagggggcgcctacccccgcggtgacccgtgatcgatcgatggcccgcattcatgtttcattgatcagtacatggtgtgggtttggtgtgctcataatgtagtataacgatttggtcacatacatatatactccctccgatcccggaaaaaaccaacctagaagagagaacaagacatttcctaatacaacgaatacaaatagttgtccagatttattgtatgcctcgtctactcctaggttggttttttttggaacaaaaagagtatgctgcatatatatacacatatacaaatagatgcatctagctaatgccagagtttaattagttataagggatggtgtaacaatcaaaatgtttcacttgctaacgcacatatatatgattcagtcatatatatattatccactatgcatggtaatggtatacgcatctataaattatataca
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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