2024-09-29 10:19:32, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001417632 1449 bp mRNA linear PLN 18-FEB-2024 DEFINITION Oryza sativa Japonica Group WUSCHEL-related homeobox 6-like (LOC4332705), transcript variant 2, mRNA. ACCESSION NM_001417632 XM_015773519 VERSION NM_001417632.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1449) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK111000.1. On Mar 7, 2023 this sequence version replaced XM_015773519.2. ##Evidence-Data-START## Transcript exon combination :: AK111000.1, CI228269.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN07627068 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1449 AK111000.1 1-1449 FEATURES Location/Qualifiers source 1..1449 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..1449 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /note="WUSCHEL-related homeobox 6-like" /db_xref="GeneID:4332705" exon 1..1012 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /inference="alignment:Splign:2.1.0" misc_feature 76..78 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /note="upstream in-frame stop codon" CDS 220..1290 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /note="isoform 2 is encoded by transcript variant 2; LOC_Os03g20910; WUSCHEL-related homeobox 6" /codon_start=1 /product="wUSCHEL-related homeobox 6 isoform 2" /protein_id="NP_001404561.1" /db_xref="GeneID:4332705" /translation="
MEGSSNSPDRQSSGGSPPEERGGGGSGGGGGRSAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPAAASAATVQVGLPPGAVVHTMAMGGSACQYEQQASSSSSSGSTGGSSLGLFAHGAGASGAGGYLQASCGASASASSALAPGLMGDVVDSGGSDDLFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRGPIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVTIHLQALTSWSHRSLSTPISQCSFVFMKAPHF"
misc_feature 220..354 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /note="propagated from UniProtKB/Swiss-Prot (Q10M29.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 337..498 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" exon 1013..1449 /gene="LOC4332705" /gene_synonym="OsWOX6; WOX6" /inference="alignment:Splign:2.1.0" ORIGIN
gtgcaagcatggtttaattgttgttgcctcctctcaagctagctagctatactactccgatcctctctcgcttattgaaacctagctactgcttcacatgtagcgcgtgctgcaactcgtgttgtgtcactcacacacacatccaagaaccaagattccgaggtaaccaacgctcgatcttttacttaccctatctcccgacgatcgatcgatcgatcgatggaggggagcagtaatagcccggataggcagtcgtcgggcggcagcccgccggaggagcgcggcggcgggggaagcggtggaggaggagggcggagcgccgccggcgagccggtgcggtcgcggtggacgcccaagccggagcagatactgatcctggagtccatcttcaacagcggcatggtcaacccgcccaaggacgagaccgtccgcatccgcaagctgctcgagaggttcggcgccgtcggcgacgccaacgtcttctactggttccagaaccgccgctcgcgctcgcgccgccgccagcgccagatgcaggcggccgccgccgccgccgcagcggcggcctcttcctcttccccatccgccaacacctctcccgcagccgcgagcgccgccaccgtgcaggtgggcctcccgcccggcgccgtcgtccacaccatggccatgggtgggagcgcgtgccagtacgagcagcaggcgagctcgtcgtcgtcgtccggcagcacgggaggttcgtcgctggggctgttcgcgcacggcgcgggggcctccggcgccggcgggtacctgcaggcgtcgtgcggcgcgtccgcgtcggcgtcgtcggcgctggcgcccgggctgatgggggatgtggtggacagcgggggaagcgacgatctcttcgccatctcgaggcagatggggtttgtggggagccctcgctgctcgccggccagctcgccggcgacgccgagctccgcggccaccgccgcgcagcagcagttctactcatgccaattacctgcagcgacgatcacggtgttcatcaacggagtcccaatggagatgccgaggggtccaatagacttgcgagccatgttcggccaggatgtgatgctcgtccactctactggggccctcctcccagtcaacgactatggaatcctaatgcagagcctccaaatcggagagagctactttctggtaaccatccatctccaagctcttactagctggtctcatcgctctctctctactccgatcagtcaatgcagtttcgtcttcatgaaagcaccacatttttaggcatgcattcatgcttatatatgtgtatcatgtttgaatgtgcaaaactaattactattaatttaattaattgcatgcatgtttgtgtgaattgtgaaatgcatagctagctattgttgtgatcttcttaatttcctgcttaatgaggagtacatttat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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