LOCUS       NM_001417595            2145 bp    mRNA    linear   PLN 18-FEB-2024
DEFINITION  Oryza sativa Japonica Group probable xyloglucan
            6-xylosyltransferase 1 (LOC4332564), mRNA.
ACCESSION   NM_001417595 XM_015775956
VERSION     NM_001417595.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI622987.1, AK109538.1, AK060863.1 and CI247543.1.
            
            On Mar 7, 2023 this sequence version replaced XM_015775956.2.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-347               CI622987.1         2-348
            348-800             AK109538.1         1019-1471           c
            801-1595            AK060863.1         2-796
            1596-2145           CI247543.1         1-550
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..2145
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /note="probable xyloglucan 6-xylosyltransferase 1"
                     /db_xref="GeneID:4332564"
     exon            1..2145
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    450..452
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /note="upstream in-frame stop codon"
     CDS             501..1847
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /EC_number="2.4.2.39"
                     /note="LOC_Os03g18820; Protein SHORT ROOT HAIR 2; proteinn
                     SHORT ROOT HAIR 2"
                     /codon_start=1
                     /product="probable xyloglucan 6-xylosyltransferase 1
                     precursor"
                     /protein_id="NP_001404524.1"
                     /db_xref="GeneID:4332564"
                     /translation="

MWVAERVVGERRMREIQRFARNAKLTVVCLLLTVVVLRGTVGAGKFGTPQQDLIELRHRFISHPHRALAEHHDALSRGGGSSSSSGRAAQRDDEPDPPPRTLRDPPYTLGPKISDWDEQRAAWHRRHPETPPFVNDVKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKMDYCRVHGLEIFYNMALLDAEMAGFWAKLPLLRALLLAHPEIEFLWWMDSDAMFSDMAFELPWERYGPYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPVRIEAGKVLTKYLKDRPVFEADDQSAMVYILATEREKWGDKVYLENGYYLHGYWGILVDRYEEMLENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMERAFNFGDNQILQMYGFTHKSLGSRKVKRIRNETSNPLDVKDELGLLHPAFKAMKTTST"

     sig_peptide     501..629
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /inference="COORDINATES: ab initio prediction:SignalP:6.0"
     misc_feature    510..1823
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /note="xyloglucan 6-xylosyltransferase; Provisional;
                     Region: PLN03182"
                     /db_xref="CDD:215617"
     misc_feature    558..626
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10MQ0.1);
                     transmembrane region"
     misc_feature    711..839
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10MQ0.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1761..1763
                     /gene="LOC4332564"
                     /gene_synonym="OsJ_27597; OsXXT1; SRH2; XXT1"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255|PROSITE-ProRule:PRU00498; propagated
                     from UniProtKB/Swiss-Prot (Q10MQ0.1); glycosylation site"
ORIGIN      

ggctattcccctccccttttaccaccaccaccttccccttcggccttctccttctcctcctccttcctcctccttgcagcggccgggtcagggggttgattcgatttcgattccgatttcgcgtctccccagatttccccttccattccgcctcccgatcgctcagacagccaccgcaatccgctctccgaggccaacgtgcgcgcttcgctcgctcgcgggtcgcggcaccactccgcctcgccctttctcttattaattcgcctccaactccgcggttcaaaacctcctcggcttcttcctccaccaccaccaccaccaccaccactccgcgccgccgacgccgccgccgtcgccgtagacgcggtataccggtgattccttgcctgcatttttgatttgctgcttttgggttgggggaggagggtttgtttgtttatttgtttgtttgatcggtgtggggggatcggaggaaggggcaggagagggaggggggcaaaatgtgggtggcggagcgggtggtgggggagcggcggatgcgggagatccagcggttcgcgaggaacgcgaagctcaccgtagtgtgcctgctgctcaccgtcgtcgtgctccgcggcaccgtcggggcgggcaagttcggcacgccgcagcaggacctcatcgagctccgccaccgcttcatctcgcacccgcaccgcgcgctggcggagcaccacgacgcgctgtcgaggggcggcggctcgtcgtcctcctccgggcgcgcggcccagcgggacgacgagccggacccgccgccgaggacgctccgggacccgccctacacgctgggccccaagatctccgactgggacgagcagcgggccgcgtggcaccgccgccacccggagacgccgcccttcgtcaacgacgtcaagccgcgggtgctgctcgtcacgggctcctcgcccaagccgtgcgagaaccccgtcggcgaccactacctcctcaagtccatcaagaacaagatggactactgccgcgtccacggcctcgagatcttctacaacatggcgctgctcgacgccgagatggccggattctgggccaagctcccgctcctccgcgcgctgctcctcgcgcacccggagatcgagttcctctggtggatggactccgacgccatgttctccgacatggcattcgagctgccatgggagcggtacggcccctacaacctcatcatgcacggctgggatgagatggtctacgacgacaagaactggattggcctcaacacaggcagcttcttgctgcgcaactgccaatggtcgcttgatttccttgatacatgggcaccaatgggaccaaagggccctgtccgtattgaggccgggaaggttttgaccaagtacttgaaggatcggccggtgtttgaggctgatgatcagtcggccatggtatacatccttgctacagagcgtgagaaatggggtgacaaggtgtaccttgagaatgggtattacctccatggatattggggtatcttggttgataggtatgaggaaatgcttgagaattaccatccaggacttggtgatcaccggtggccactggtcactcactttgtcggatgcaagccgtgtgggaagtttggggattaccctgtggagaggtgcctcaagcagatggagcgtgctttcaattttggggataatcagatcttgcaaatgtatgggtttacacacaagtcgcttggcagcaggaaggtgaagaggatcaggaatgagactagcaacccacttgatgtcaaggatgaactagggttgctccacccagcattcaaggccatgaagactacttctacgtgataagtgataattagagtacaatgccacgcgttatttcgttcattgtagatccttttgggtctaaaatcttaaaaaggtgttctttttgtagacttgggttgacaagggagtttgggttgggatcaaacatcaaaggatggatatctatgttgtaatgtgaaattttaggagaacaatggtatgtttattgctggcataatttatgtcttacacttctagaaattgagttagtgaagggaactctgttaattgatcaccactatatatttctatagaatttcatatttcttattcgatg

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