2024-09-29 10:23:49, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001417441 2110 bp mRNA linear PLN 18-FEB-2024 DEFINITION Oryza sativa Japonica Group heptahelical transmembrane protein ADIPOR3-like (LOC4332161), mRNA. ACCESSION NM_001417441 XM_015777675 VERSION NM_001417441.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2110) AUTHORS Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J., Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y. and Yasunishi,A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI624920.1, AP014959.1, CI304443.1, AK072709.1 and CI114753.1. On Mar 4, 2023 this sequence version replaced XM_015777675.2. ##Evidence-Data-START## Transcript exon combination :: AK072709.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04585873, SAMN07627069 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-48 CI624920.1 3-50 49-51 AP014959.1 7051283-7051285 c 52-273 CI624920.1 54-275 274-520 CI304443.1 1-247 521-2018 AK072709.1 453-1950 2019-2110 CI114753.1 359-450 FEATURES Location/Qualifiers source 1..2110 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..2110 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="heptahelical transmembrane protein ADIPOR3-like" /db_xref="GeneID:4332161" exon 1..766 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /inference="alignment:Splign:2.1.0" misc_feature 477..479 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="upstream in-frame stop codon" CDS 534..1745 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="LOC_Os03g13040; PAQR family protein ADIPOR3" /codon_start=1 /product="heptahelical transmembrane protein ADIPOR3" /protein_id="NP_001404370.1" /db_xref="GeneID:4332161" /translation="
MAAAAGEEVEAARWAEAEDERKEGLRRRRRYGLVEYRALPGYMRDNEYILRHYRCEWPLPQVLLSAFSIHNETLNVWTHLIGFFIFLVLTIYTATQVPNVVDLQSLQHLPDVLRNADLHKIQTELVACLPSLPHLSDLQKLKDELKSSWNSIEVLPSLSRWHLLELLSSCLPHRFTHSNETSLSVLQSMKEDIANMIAPQLIRPIPRWPFYAFLGGAMFCLLASSTCHLLSCHSRRLAYIMLRLDYAGIAALIATSFYPPVYYSFMCYPFFCNLYLSCITILGVATIAFSLLPVFQNPEFRTIRACLFFGMGASGVIPVIHKLILFWHQPEALHTTAYEVLMGLFYGIGALVYATRVPERWMPGKFDIAGHSHQLFHVLVVAGAYTHYHSGLVYLKWRDVQGC"
misc_feature 753..815 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" misc_feature 1143..1697 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="Haemolysin-III related; Region: HlyIII; pfam03006" /db_xref="CDD:427098" misc_feature 1161..1223 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" misc_feature 1272..1334 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" misc_feature 1356..1418 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" misc_feature 1452..1514 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" misc_feature 1527..1589 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" misc_feature 1656..1718 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /note="propagated from UniProtKB/Swiss-Prot (Q10PI5.1); transmembrane region" exon 767..1091 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /inference="alignment:Splign:2.1.0" exon 1092..2110 /gene="LOC4332161" /gene_synonym="ADIPOR3; OJ1175C11.13" /inference="alignment:Splign:2.1.0" ORIGIN
gtgatgaatcgctcgcaccctacccaacccaaccctccccgactcgccgctccacgccgcaggcccccgcgcgcgcagaggcgtaggcgagcgagcaaacgacacggcacgacagtacggcaccaaaccccaaccccaacaccggtcgcgctcgcgtcgcaccgccccggcagccaagagagagaagcccaggaaaggccaaggtgatcgacgagcgcacgcacgcacgcacgcggcgccgtcagaaggccagagcggggggagaggggaggaggggctaaatcggggagaggtctccgtcatctccgactcgcggcgcggccccctcgccgagaccgacgggccgacgcaaccgaggcgagccagcgatcgagcgggcggggggcaacgcgtacaaaaaaaccccctccccttcccttcccttccctctcggtcgcgtcgtcgcgtggtcggcgaatattcgagcggcaacggcataacaccattgtcgcccgggacgcgcgctctttctctctctctctctcttcctggcgatggcggcggcggcgggggaggaggtggaggcggcgcggtgggcggaggcggaggacgagaggaaggaggggctgcggcggcggcggaggtacgggcttgtggagtaccgggcgctgccgggctacatgcgggacaacgagtacatcctgcgccactaccgctgcgagtggccgctcccgcaggtgctcctctccgccttctccatccacaacgagaccctcaacgtctggacgcacttgataggatttttcatctttcttgttcttaccatatacaccgcaacacaagttccaaatgtagtagatcttcaaagtctgcagcatttacctgatgtgctgagaaacgctgatcttcataagattcagacagaacttgtggcatgccttccttcgttacctcacctttctgacttgcaaaagctgaaggatgaattgaaaagctcatggaattcaattgaggtgcttccatcattgtcccgttggcacctcttggagttactatcaagttgcttgccgcacagatttactcattccaatgaaaccagtctgtctgttcttcaaagcatgaaggaagatatagcaaacatgattgcgccacagttgattaggccaattccgagatggccattttatgccttcttgggaggagcaatgttttgccttcttgccagcagcacatgccatcttctctcctgccactcccgtcgccttgcatacattatgcttcgccttgattatgcaggcattgctgctcttatcgcaacatcattctaccctccagtatactattctttcatgtgctatccattcttttgcaacctgtatctcagctgcataactattttaggagtggcaactattgctttctctttactccctgttttccagaaccctgagtttcggaccatacgagcatgcctcttctttggcatgggtgcatccggcgtgatccctgtcattcacaaattgatcctcttttggcaccaaccagaggcattgcacactaccgcatatgaggttctgatgggccttttctatggcattggggcactggtgtatgcaactcgggtgcccgagcgctggatgcctggaaaatttgacattgctggtcatagccaccagctttttcatgtgttagttgttgctggagcatacacacactatcattctggactggtatacctcaagtggagagacgtgcaaggctgctagaaattatctgtgtgctcgtaggatgtggatagattgtaggtgccctgcttgtgtcccgaaaaagaggaccgctgattctctctcgtcttcagaaacaaaagatgactgttgttgttggccaaaagactagacctggtctgttgtaaaatgtaacggaggacttgctagtactgtgagatacaaattgataatgagtgatgatcggtacctgtaaactgtggtgtggtattggctgatttttcagggtgcaactcacttgataaatcaggccctattattcccagaaaataactattcagtgataccacagcccctgctgtgcatcttgtgccgctatttatcagcttgctcaagttcaatgcata
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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