LOCUS       NM_001417317            1288 bp    mRNA    linear   PLN 05-MAY-2025
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX12-like (LOC4331956), mRNA.
ACCESSION   NM_001417317 XM_015773556
VERSION     NM_001417317.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1288)
  AUTHORS   Shao,J., Haider,I., Xiong,L., Zhu,X., Hussain,R.M.F., Overnas,E.,
            Meijer,A.H., Zhang,G., Wang,M., Bouwmeester,H.J. and
            Ouwerkerk,P.B.F.
  TITLE     Functional analysis of the HD-Zip transcription factor genes
            Oshox12 and Oshox14 in rice
  JOURNAL   PLoS One 13 (7), e0199248 (2018)
   PUBMED   30028850
  REMARK    GeneRIF: The findings suggest that Oshox12 and Oshox14 may be
            involved in the regulation of panicle development.
            GeneRIF: The encoded protein binds to (CAAT(A/T)ATTG). It is
            expressed predominantly in the panicle and localized to the
            nucleus. Overexpression of the gene leads to semi-dwarf phenotype
            accompanied by reduced grain number.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1288)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI778541.1, AK073446.1, CI443264.1 and CI405113.1.
            
            On Mar 2, 2023 this sequence version replaced XM_015773556.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK073446.1, CB651021.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN37494760,
                                           SAMN37494768 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-364               CI778541.1         2-365
            365-727             AK073446.1         369-731
            728-922             CI443264.1         1-195
            923-1288            CI405113.1         45-410
FEATURES             Location/Qualifiers
     source          1..1288
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1288
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /note="homeobox-leucine zipper protein HOX12-like"
                     /db_xref="GeneID:4331956"
     exon            1..290
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    146..148
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /note="upstream in-frame stop codon"
     CDS             209..928
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /note="HD-ZIP protein HOX12; Homeodomain transcription
                     factor HOX12; LOC_Os03g10210"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX12"
                     /protein_id="NP_001404246.1"
                     /db_xref="GeneID:4331956"
                     /translation="

MSREEDEKLLFPSFAFPAECFPEAATSGGEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLAAVAAATTGGGGGGGGGSSSPTSSSFSTVTYHPALAGQFGVEAAAEEADLTYMSEYAYNSYMLELAAAGYCGGVYDQFS"

     misc_feature    281..403
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /note="propagated from UniProtKB/Swiss-Prot (Q10QF2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    389..550
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            291..634
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /inference="alignment:Splign:2.1.0"
     exon            635..1288
                     /gene="LOC4331956"
                     /gene_synonym="HOX12; OsHox12; OsJ_009423"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gactcggacaccaccggtcacttgaattgtcaagctagctagccttctcatcagcctggctctcagtctcaaagaaagcacaaaggtagctagcttagcatcgattgaagctgaccagagagatagttaagaatttgccatagcttagtgtttggtgcatacacacaactgctctcgttgtttttgctcttttgggttcgctcggaagatgagccgtgaggaggatgagaagctgctgttcccttcgttcgccttcccggcggagtgcttcccggaagccgccacctccggtggcgagcagaagaaggctcggcagcggcggaggaggaaggtgaagccggaagcggcggcagcgttggctggagagagcggaggggatgagcaggcgaagaagcggcggctgagcgacgagcaggcgcggtttctggagatgagcttcaagaaggagcggaagctggagacgccgcgcaaggtgcagctcgccgcggagctgggcctcgacgccaagcaggtcgccgtctggttccagaaccgccgcgcccgccacaagagcaagctcatggaggaggagttcgccaagctccgctccgcccacgacgccgtcgtcctccagaactgccacctcgagaccgagttgctgaagctgaaggagaggctggcggatgtagaggaggagaaggcgaagctagcagctgtcgccgcggcgacgaccggcggcggtggtggcggcggcggcggcagcagcagcccgacctcgtcgtcgttctccacggtgacgtaccacccggcgctggcggggcagttcggcgtggaggcggcggccgaggaggccgacctcacctacatgagtgagtacgcgtacaacagctacatgctggagttggcggcggccggctactgcggcggggtctacgaccaattcagctgagcgccgccactcgccggggccggcgccgacggaggattaactagctacagtagctgttaattaatggatcgatcaattgcagggtagtaattcagtagtggtggtgtttattagtagtatcaatgatcgatatatcatcagtcgtgttgccctaacgaaaaatctttagcggtgactttgctaagccatgtagattattaaattggatgtctttgtaagtatatgtgtttagaatatcatgcaagtggttgccatggactgattaattatgccatgatgtaatatttggtactggtactactcacgatcagagcacagaagatgcatgcacatgttttggcgtcttctgccttttatgcc

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