LOCUS       NM_001417276            1946 bp    mRNA    linear   PLN 18-FEB-2024
DEFINITION  Oryza sativa Japonica Group probable monogalactosyldiacylglycerol
            synthase 2, chloroplastic (LOC4345212), mRNA; nuclear gene for
            chloroplast product.
ACCESSION   NM_001417276 XM_015793649
VERSION     NM_001417276.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014964.1 and AK064148.1.
            
            On Mar 2, 2023 this sequence version replaced XM_015793649.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK064148.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02716059, SAMN07124406
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-301               AP014964.1         12265790-12266090
            302-1646            AK064148.1         1-1345
            1647-1946           AP014964.1         12269521-12269820
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
                     /map="8"
     gene            1..1946
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /note="probable monogalactosyldiacylglycerol synthase 2,
                     chloroplastic"
                     /db_xref="GeneID:4345212"
     exon            1..427
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    65..67
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /note="upstream in-frame stop codon"
     CDS             119..1528
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /EC_number="2.4.1.46"
                     /note="OSJNBa0063H21.123; putative MGDG synthase type A;
                     P0045D08.104; LOC_Os08g20420; OSJNBa0070J19.22"
                     /codon_start=1
                     /product="probable monogalactosyldiacylglycerol synthase
                     2, chloroplastic"
                     /protein_id="NP_001404205.1"
                     /db_xref="GeneID:4345212"
                     /translation="

MVISVATPRRSIRDAVLGGVLGAGGRQLYQPLRCAFYDGAAGGGLTAALSEDGAEGGVPLPCGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPLNDMERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISVHPLMQHIPLWVLKWQSLHPKVPFVTVITDLNTCHPTWFHHGVTRCYCPSAEVAKRALLRGLEPSQIRVYGLPIRPSFCRAVLDKDELRKELDMDPDLPAVLLMGGGEGMGPVEETARALSDELYDRRRRRPVGQIVVICGRNQVLRSTLQSSRWNVPVKIRGFEKQMEKWMGACDCIITKAGPGTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFSKDPREAARQVARWFTTHTNELRRYSLNALKLAQPEAVFDIVKDIHKLQQQPATVTRIPYSLTSSFSYSI"

     transit_peptide 119..244
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /note="Chloroplast. /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q6UTZ2.2)"
     mat_peptide     245..1525
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /product="Probable monogalactosyldiacylglycerol synthase
                     2, chloroplastic. /id=PRO_0000349429"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6UTZ2.2)"
     misc_feature    332..1471
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /note="monogalactosyldiacylglycerol synthase; Region:
                     PLN02605"
                     /db_xref="CDD:215325"
     exon            428..600
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     exon            601..762
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     exon            763..904
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     exon            905..1129
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1192
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     exon            1193..1267
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1946
                     /gene="LOC4345212"
                     /gene_synonym="MGD2; OsJ_025729; OsMGD2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tcgccaccttctcgcctccctgccttctctctctgtctctctctcttcgccggcaaacctttcgtaggctcgatccacgagacgaggaggagaagccgccgcccccgccgccgccgccatggtgatctcggtcgccaccccccgccgctccatccgcgacgccgtgctgggtggcgtgctcggcgccggaggccgccagctctaccagcccctccgctgcgccttctacgacggcgccgccgggggcggcctcaccgccgcgctctcggaggatggagccgagggcggcgtccccctcccgtgcgggaggaagacggcggcggcgaagaacgtgctcatcctcatgagcgacaccggcggcggccaccgcgcatccgccgaggccctccgcgacgccttccgcctcgagttcggcgacgcctaccaggtgttcgtgagagatttggggaaggagtacggcgggtggccactgaacgacatggagcggtcgtacaagttcatgatccgccatgtccggctctggaaggtggcgttccacggcacttcgccgcgctgggtgcacggcatgtacctcgccgcgctggcctatttctacgccaacgaggtggtggccgggatcatgaggtacaaccccgacattatcatcagcgtgcacccgctgatgcagcacatcccgctgtgggtgctcaagtggcagagcctccaccccaaggtgccattcgtcaccgtcatcaccgacctcaacacctgccacccgacatggttccaccatggcgtgacgaggtgctactgcccgtcggcggaggtggccaagagggcactgctccgggggctcgagccgtcccaaatccgtgtgtacgggttgccgatcaggccgtccttctgccgcgccgtgctcgacaaggatgagctgaggaaagagctggacatggatcccgacctgcctgcagtgctactgatgggcggcggcgaggggatgggtccggtggaggagacggcgagagcactcagcgacgagctctacgatcgccggagacgccggcctgtcgggcagatcgttgtcatctgtggcaggaaccaggtgctgcggtccacgctgcagtcgtcacggtggaatgtccctgtcaagattagagggttcgaaaagcagatggagaagtggatgggcgcttgcgattgcatcatcacaaaggctggtcctggtacaattgcagaggccctgataagaggactcccaattattctcaacgacttcatacctggacaggaagtcgggaatgtgccttacgtcgtggacaatggtgccggtgtgttctccaaggacccgagggaagccgcgagacaggttgccagatggttcaccacacacacaaacgagctccggagatactccctcaacgcgctgaagctagcgcagccagaagccgtgttcgacatcgtgaaggacatccacaagctccagcagcagcctgccacggtgacgcggatcccttactccctgacctcatcgttctcatacagcatatgaaaaaccatcaaggttacaggatgtactatgctatgctctgcaaacatgctttgcctcggaaggttggtccgcttgctgaagaacttgtacatactgaattggatttgttcgtttgtccaaatgtgtaaatgcaataagaacagatgaactgaagatgttgtctaactggcctgctgctgatatgaagatgaagttgtggtgagagtgactgactacgagtgacaaatcatcccctcccatagctaaatatgtcctgatagaacatcttcatcttttgtacaactacagtatagttacgtggctaactggaccatctgcatagtttttctttttcactccttgtcaatcgtattgatactagattgtttggcaccatattctatcttataacttagcgattgtataatgttgtttcatg

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