2024-09-29 10:37:22, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001417081 1292 bp mRNA linear PLN 24-FEB-2023 DEFINITION Oryza sativa Japonica Group nicotinamide/nicotinic acid mononucleotide adenylyltransferase-like (LOC4331124), mRNA. ACCESSION NM_001417081 XM_015770329 VERSION NM_001417081.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CF337178.1, CA754011.1, AK242265.1 and CF317726.1. On Feb 24, 2023 this sequence version replaced XM_015770329.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN03003383 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-74 CF337178.1 2-75 75-468 CA754011.1 59-452 469-958 AK242265.1 466-955 959-1292 CF317726.1 1-334 c FEATURES Location/Qualifiers source 1..1292 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="2" /map="2" gene 1..1292 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /note="nicotinamide/nicotinic acid mononucleotide adenylyltransferase-like" /db_xref="GeneID:4331124" exon 1..230 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" CDS 175..924 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /EC_number="2.7.7.1" /EC_number="2.7.7.18" /note="nicotinamide-nucleotide adenylyltransferase-like; LOC_Os02g56980; NMN adenylyltransferase; NMN/NaMN adenylyltransferase; Nicotinamide mononucleotide adenylyltransferase; Nicotinate-nucleotide adenylyltransferase" /codon_start=1 /product="nicotinamide/nicotinic acid mononucleotide adenylyltransferase" /protein_id="NP_001404010.1" /db_xref="GeneID:4331124" /translation="
MEELELPLPTEKLAVDPGREGGKRGVAVLVATGSFNPPTYMHLRMFELAKDELQQRGYSVLGGYMSPVNDAYKKKGLLSAAHRIRLCELACESSSFVMVDRWEAMQKGFQRTLTVLSRIRNALSKDGLADGGSPNVMLLCGSDLLESFSTPGVWIPDQVRIICKDFGVICIRREGKDVEKIISSSEILNECRDNIISVDEIVPNQISSSRVRECIKKCLSIKYLVCDEVIQYIGEHKLYKEADGSDTRK"
misc_feature 184..894 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /note="nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase; Region: PLN02945" /db_xref="CDD:178531" misc_feature order(265..279,289..291,295..300,307..309,586..588, 592..597,601..603,790..792) /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /note="active site" /db_xref="CDD:185681" misc_feature 289..300 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /note="(T/H)XGH motif; other site" /db_xref="CDD:185681" exon 231..313 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 314..399 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 400..483 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 484..568 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 569..648 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 649..750 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 751..809 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" exon 810..1272 /gene="LOC4331124" /gene_synonym="OJ1293_E04.25; OsJ_08854" /inference="alignment:Splign:2.1.0" ORIGIN
ctcttccgccctatcgccggcggcgcggctccagcaaagctcggcggcgtgctccggcgaccaaggaggccacggaatactgagaggatcagtggaagtgagggccggacctccttagggcggagtcgaaatttcgtagcagttgagaatcttcgcaggtactggagggcggccatggaggagctggagttgcctctccccacggagaagctcgccgtggatccgggcagggagggaggaaagcgaggtgtggctgtgctcgtggccaccgggagcttcaatcctcccacctacatgcacctgcgcatgtttgaactggcaaaggatgaattgcagcagcgagggtattctgtcttgggtggttacatgtctccggtgaacgatgcttacaagaagaagggccttttatctgcagcccaccgaattcgcttatgcgaactagcatgtgaaagctcatcttttgtgatggttgatcgatgggaggcaatgcagaaaggtttccaacgcaccttgactgttctctcgagaattcggaatgctttgtccaaggatggtttagctgatggaggtagtcccaatgtaatgcttttatgtggttccgacctgctcgaatcattcagcaccccaggagtttggattcctgatcaggtcaggatcatatgtaaggactttggtgttatttgcatacgtagagaaggaaaagatgttgaaaaaataatatccagcagtgagatactgaacgaatgcagggataatattatttcagttgatgagattgttccaaatcaaataagttcgtctagagtaagagaatgcataaaaaaatgcctatcaataaagtatcttgtatgtgatgaagtcatccagtatattggagaacacaaactctacaaggaagctgacggcagtgatacaagaaaatgacaataaagggtccagtgcaggcaatctgaatatagaccttaatatattcacggttaaatgttaggtgcctgttttatagctaataggcaaatgttgtaccctgggcatctgttttgggatatacaactgaattggatgatgagaagcatttgttttatttacaaaaatgaaacatttcgaaataaaaagagcacctgctaattgcatgttgactggaagttgtatcataatacagatagatgagatacttgtcagcagttgtactccaacatgtaatgctggacatatttcctacaaagcttcattgtgtccatgttagtatggttgctgatcacaatatttcagaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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