2024-09-29 10:27:58, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001409087 2108 bp mRNA linear PLN 08-JUL-2022 DEFINITION Oryza sativa Japonica Group protein IQ-DOMAIN 1 (LOC4327410), mRNA. ACCESSION NM_001409087 VERSION NM_001409087.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2108) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK072219.1, AK103458.1 and CF317813.1. ##Evidence-Data-START## Transcript exon combination :: AK072219.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03003175 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-428 AK072219.1 1-428 429-431 AK103458.1 390-392 432-765 AK072219.1 432-765 766-770 AK103458.1 1227-1231 771-1909 AK072219.1 771-1909 1910-2108 CF317813.1 1-199 c FEATURES Location/Qualifiers source 1..2108 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="1" /map="1" gene 1..2108 /gene="LOC4327410" /note="protein IQ-DOMAIN 1" /db_xref="GeneID:4327410" exon 1..72 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" exon 73..203 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" exon 204..318 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" misc_feature 223..225 /gene="LOC4327410" /note="upstream in-frame stop codon" CDS 241..1743 /gene="LOC4327410" /note="Os01g0833800; P0460C04.27-1; putative SF16 protein" /codon_start=1 /product="protein IQ-DOMAIN 1" /protein_id="NP_001396016.1" /db_xref="GeneID:4327410" /translation="
MGKKGNWFSAVKKVFSSSDPDGREAKIEKADKSRSRRKWPFGKSKKSDPWTSTVAVPTSTAPPPQPPPPPPTHPIQPQPEEIKDVKAVETDSEQNKHAYSVALASAVAAEAAAVAAQAAAEVVRLTTATTAVPKSPVSSKDELAAIKIQTAFRGYLARRALRALRGLVRLKSLVDGNAVKRQTAHTLHCTQTMTRVQTQIYSRRVKMEEEKQALQRQLQLKHQRELEKMKIDEDWDHSHQSKEQVETSLMMKQEAALRRERALAYAFSHQWKNSGRTITPTFTDQGNPNWGWSWMERWMTSRPWESRVISDKDPKDHYSTKNPSTSASRTYVPRAISIQRPATPNKSSRPPSRQSPSTPPSRVPSVTGKIRPASPRDSWLYKEDDLRSITSIRSERPRRQSTGGASVRDDASLTSTPALPSYMQSTESARAKSRYRSLLTDRFEVPERVPLVHSSIKKRLSFPVADKPNGEHADKLMERGRRHSDPPKVDPASLKDVPVS"
misc_feature 1432..>1650 /gene="LOC4327410" /note="Protein of unknown function (DUF4005); Region: DUF4005; pfam13178" /db_xref="CDD:404128" exon 319..708 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" exon 709..930 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" exon 931..1050 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" exon 1051..2094 /gene="LOC4327410" /inference="alignment:Splign:2.1.0" ORIGIN
gcgaggaaagtaaaaaaaaaaaaaggagagaagaaaaaaaaacaggttgggttatccaccatttccgcctcttagaagcagggggagggacggtgggcggtggcttgggagggaggcaggggcggggcggctcgagttaggtttcttggcggcttcagttgggcgaggaaggtgagcggctttcggtggttggttgctttgaggctttagctgaagacacaataaaggaacaccaaaaaaatgggtaagaaaggaaattggttcagtgctgtcaagaaagtcttcagctcatccgatccagatgggagggaagctaagatcgagaaggcggacaagtcgagatccaggaggaaatggccatttggaaagtctaagaagtctgatccttggacctcaacagtggcagtgcctacctctacagcaccgcctccacagccgccaccgccaccgccaacacaccctatccagccacagcctgaggagatcaaagatgtcaaggctgttgaaactgacagtgaacagaacaagcatgcgtactctgttgcacttgcctctgctgttgctgcagaagctgctgccgtcgctgcccaggccgctgctgaggtggtccgcctcacaacagccaccacggctgtgccgaaatcgcctgttagttcaaaggatgagcttgccgctatcaagattcagactgccttcaggggttatctggcaagaagagcgctgcgagcacttagagggctagttagattgaagtcgctggttgatggaaacgccgtcaaacgacaaactgcgcacaccttgcattgcacacaaaccatgaccagagttcaaactcaaatatactctagaagggtgaagatggaggaggaaaaacaggctcttcaaaggcagctacaattaaagcatcagagggaacttgagaaaatgaagattgatgaagattgggatcatagccatcagtccaaggagcaggttgagaccagcctaatgatgaaacaagaagctgcgctaaggcgggaaagagctcttgcctatgcattttctcaccagtggaagaattctggccgaactataacacctaccttcacggatcaagggaatcctaactggggatggagctggatggaacgctggatgacatcaaggccttgggagagccgagtgatatcagataaggatcctaaggaccattattcaacaaagaatcccagcactagcgcttctcgtacttatgtaccccgcgcaatctcaatccagagacctgcaacaccaaacaagtcaagccgtccaccaagtcggcaatcgccatcaactcccccgtcaagggtcccctcagttaccggaaagatcagaccagcaagtccacgggatagctggctatataaggaggatgacttgaggagcatcacaagcatacgctctgaacgcccaaggaggcagagcacaggtggtgcctctgttcgggatgatgcgagcctaacaagcacaccagctctccccagctacatgcagtccacagagtctgcaagggcgaagtctcggtaccgcagtctattgactgacaggtttgaggttcctgagagagtacccctggtccattcttcaataaagaagcgcttatccttcccagtcgcagacaaaccaaatggtgagcatgcagataagctgatggaaagagggaggcgtcattcagaccctcctaaggtggatcctgcctcactgaaggatgttccggtttcataattcagtcatattatcagagcttattattgttaggttgcttttcttcctttgtgtattttctaatttagattgcattctcgagagtcgaggttgaaccctccgtgaaaatgtatgatttgtcagggttgatttgagacaattctaactgtttacaggcagtttttttcctgatgattgttgtgtgtgaagagtaagaaaaagaaaatgaagcggtggaaaaaaatggtggtgtgttctaatattgtgtgtgcttctcttccaatgtacaatactccatgaactatgggttgacctattaattgtaagacatgggtttttctggttatgaaatatgtgtgcccgatgtgctgaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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